Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01872 ATGGACATGGAAATAGACATCCATGACCTCGATTTCTCCGGACACAGCACCATCACCAACACCCCAACTTCCGACGATGATTACGGTTGCAACTGGGACCACTGGTCTCCGATCGTCAATTGGGACGCCTTAACCGGCGCCCAAGATAACTTCCACGACCTCATGGATTCCATGATGGACGAAGACGGAAGCACCGGGATGCAGCTCAGCCCGTCAACCACCACCACGACGGAGGAGGAGGAGGAGAAAGAAGCTACGACGGCGGAGGGCGACGATTTGAAGGGGCTGAGGTTGGTGCACCTTCTCATGGCGGGAGCGGAGGCATTAACGGCCGCCAACAAGAGCCGTGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTGGTTTCCCACTCCCATGGAACCAACATGGAGAGGCTCGCCGCTTATTTCACCGAGGCCTTGCAGGGGTTGCTAGAAGGAGCAGGGGGTGCGCACAATAACAACCACAACAAACATCATTACGTCAGCGGTGGGTCCCATCATAACCAAAACGACGTCCTCGCTGCTTTCCAATTGCTTCAGGACATGTCTCCCTACGTCAAGTTCGCTCACTTCACCGCTAACCAGGCCATCCTCGAGGCCGTGGCCCACGAGCGCCGTGTCCATATTGTGGACTTCGACATCATGGAAGGGGTCCAATGGGCCTCACTCATCCAGGCCCTAGCTTCCAAGAATAACGGCCCACACCTTCGTATAACCGCATTGTCACGAACCGGCGCCGGACGGAGGTCCATCGCCACCGTGCAAGAGACCGGGAGAAGGTTGACGGCGTTCGCGGCCTCCGTAGGCCAGCCGTTCTCGTTTCATCACTGTAGGTTGGACTCCGACGAATCGTTTCGACCCTCCGCGTTGAAGCTGGTTCGAGGAGAGGCTTTGGTGTTTAACTGCATGCTGAACCTGCCGCATCTTAGTTACCGCGCACCCGATTCGGTTGCGTCGTTTTTAAACGGAGCCAAGGAGTTGAAGGCGAGGCTGGTGACGGTGGTGGAGGAGGAGGTGGGGTCCATTATTGGAGGTTTTGTGGAGCGGTTCATGGATTCGCTTCACCATTATTCAGCGGTGTTTGACTCGTTGGAGGCTGGGTTTCCGATGCAGAGTCGGGCCAGGGCGTTAGTGGAGCGGGTTTTTCTTGGGCCCAGAATAGCGGGCTCGTTGGCCCGGATATATCGGACGGGTGGAGAGGAGGAGAGAGGGTCGTGGTTGGGTGCGACGGGGTTTAGCGAAGTTCCCGTGAGCTTGGCCAATCATTGCCAAGCGAAACTGTTGTTGGGTCTATTTCATGATGGGTATGAGGTGAAAGAGTTTGGTAGTAACAAGTTGGTGTTGGATTGGAGATCAAGGCGTTTGCTTTCTGCCTCCCTTTGGACATGTTCTTCTTCGGATTCTGATTTGTAG 1440 0.5556 MDMEIDIHDLDFSGHSTITNTPTSDDDYGCNWDHWSPIVNWDALTGAQDNFHDLMDSMMDEDGSTGMQLSPSTTTTTEEEEEKEATTAEGDDLKGLRLVHLLMAGAEALTAANKSRDLARVILVRLKELVSHSHGTNMERLAAYFTEALQGLLEGAGGAHNNNHNKHHYVSGGSHHNQNDVLAAFQLLQDMSPYVKFAHFTANQAILEAVAHERRVHIVDFDIMEGVQWASLIQALASKNNGPHLRITALSRTGAGRRSIATVQETGRRLTAFAASVGQPFSFHHCRLDSDESFRPSALKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKELKARLVTVVEEEVGSIIGGFVERFMDSLHHYSAVFDSLEAGFPMQSRARALVERVFLGPRIAGSLARIYRTGGEEERGSWLGATGFSEVPVSLANHCQAKLLLGLFHDGYEVKEFGSNKLVLDWRSRRLLSASLWTCSSSDSDL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01872 479 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 78 466 IPR005202 -
Rops10g01872 479 MobiDBLite consensus disorder prediction 58 89 - -
Rops10g01872 479 Pfam GRAS domain family 98 471 IPR005202 -
Rops10g01872 479 ProSiteProfiles GRAS family profile. 89 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01872 Rops-Chr10 34711271 34712710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01872 87 476 GRAS Transcription Factor Family AT5G41920 35.589 2.43e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops10g01872 GRAS 1.6e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01872 - - tpra:123896871 744.962