Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01860 ATGGAGGATTTGCAGAGTGCATTGAGGGATCGTAATTTAACAGTTTCCACCATCCCAGAAAAGGGTCGTTCTCTCTTTGCCACAAGGGATTTCTACCCAGGGGAAGTGATTATAAGTCAAGAGCCTTATGTTTGTGTTCCAAATAACTCCTCAGTCTCAGCTCAAAAAAGGTGTGATGGATGTTTCACAACAAGTAACCTTAGTAGGTGTTCACGTTGCCAAGTTGTATGGTATTGTGGAGCCGCATGTCAGAAGTCGGAGTGGAAGTTGCATCGTCTTGAATGTGAAGCCCTCTCGAGGCTTGACATGGACAAGAGAAAATCTGTTACACCATCCATACGGCTGATGGTGAAACTTTATCTTCGAAGGAAGTTGCAAAATGAGAAGATCATCCCAAGCACTGCTATGGACAATTACAACTTGGTGGAGGCATTAGTTGCTCACATATCTGACCTCACCGAGGAGCTGCTGGTGCTGTATGCTCAGATGGCTAATCTTGTTAATATCATACTACAATGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCTAAGTTTGCTTGTAATGCTCATACCATTTGTGATGGTGAGTTGAGACCTTTGGGAACTGGATTGTATCCTGTTATTTCCATTATCAATCACAGCTGCTTGCCCAATTCGGTTTTGGTTTTTGAGGGAATATCAGCATTTGTACGTGCTGTGCAGCATATACCCAAAGGGACTGAGGTACTGATAAGTTACATAGACACAGCTGGAAGCACAATTACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACCTGCCCCCGCTGTTCTAAAGTGGGTCAGTATGATGATATTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAAAATGTGATGGTTTCTTGCTTCGTACAACTGATGGAAAAGGATTCCAATGCCAAGAATGTGGACTAGTTAGGGACAAGAATGAGATCAAGAAAATTGCAACTGAAATAAAATTGCTATCAGAAGAAGCCTCTAAGCCTTCTTCCAGTGGCAATTATCAAGAATCTATTTCCACATATAAAATGATTGAGAAACTGCAAACAAAACTATATCATCCTTTCTCGATCAACTTGATGCAAACTCGAGATAAAATTTTGAAGTCATTAATGAAGCTGGAAGATTGGAAAGAAGCTTTGGAATACTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTAACCCTCTGCTTGGTTTGCAATATTATACTTGTGGAAAACTCGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCACTAACCAAGGCAGTGGATATACTCCGGATTACTCATGGTACCAATACACCTTTCATGAAGGAACTCTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCTTCTTACAAATTGTCCTCTGAAGAGTAA 1449 0.4058 MEDLQSALRDRNLTVSTIPEKGRSLFATRDFYPGEVIISQEPYVCVPNNSSVSAQKRCDGCFTTSNLSRCSRCQVVWYCGAACQKSEWKLHRLECEALSRLDMDKRKSVTPSIRLMVKLYLRRKLQNEKIIPSTAMDNYNLVEALVAHISDLTEELLVLYAQMANLVNIILQWPEINIKEIAEIFSKFACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEGISAFVRAVQHIPKGTEVLISYIDTAGSTITRQKALKEQYLFTCTCPRCSKVGQYDDIRENAILEGYRCKNEKCDGFLLRTTDGKGFQCQECGLVRDKNEIKKIATEIKLLSEEASKPSSSGNYQESISTYKMIEKLQTKLYHPFSINLMQTRDKILKSLMKLEDWKEALEYCKLTIPIYQRVYPAVNPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKELLMKLEEARAEASYKLSSEE* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01860 482 ProSiteProfiles Zinc finger MYND-type profile. 58 95 IPR002893 -
Rops10g01860 482 Pfam Tetratricopeptide repeat 387 450 - -
Rops10g01860 482 SUPERFAMILY TPR-like 346 448 IPR011990 GO:0005515
Rops10g01860 482 Pfam MYND finger 58 95 IPR002893 -
Rops10g01860 482 Gene3D SET domain 24 276 IPR046341 -
Rops10g01860 482 Gene3D Tetratricopeptide repeat domain 403 480 IPR011990 GO:0005515
Rops10g01860 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 14 469 - -
Rops10g01860 482 SUPERFAMILY SET domain 11 251 IPR046341 -
Rops10g01860 482 ProSiteProfiles SET domain profile. 11 250 IPR001214 GO:0005515
Rops10g01860 482 Gene3D - 108 192 - -
Rops10g01860 482 Gene3D - 57 107 - -
Rops10g01860 482 SMART set_7 11 256 IPR001214 GO:0005515
Rops10g01860 482 Pfam SET domain 22 249 IPR001214 GO:0005515
Rops10g01860 482 Coils Coil 321 341 - -
Rops10g01860 482 ProSitePatterns Zinc finger MYND-type signature. 58 95 IPR002893 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops10g01860 SET 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01860 K11426 - gmx:100789518 834.713