Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01855 ATGCGTGTAAAGAACACACCAAAACCGCCATTGCTATCTGATTCCTCAAGCGATGAGGAAGATGAGAAGTTGAAGGAGCTGATTCGAAAGGGAAGCGCCAAAGTGGAAGCGTCCATGTTGGATCCTCGTGATGAGGGAACCTTGGACCACTGGATCCAACGTAACGCTTCCTTGGTGCGCCTTACGGGAAAGCATCCCTTCAACGCGGAGCCACCACTACCAAAGCTTATGCACCACGGTTTCATCACCCCAGCCCCCCTTCACTACGTCCGCAACCATGGGCCTGTTCCCAAGACCCACTGGGAAGACTGGACCATCGAGGTTTGCGGCCTCGTGAAGCGCCCGGCACAATTCACCATGGACCAGTTGGTCCAAGACTTCCCCAGCCGCGAGTTCCCCGCCACCATCGTTTGCTCGTCGAACCGCCGCAAGGAGCAGAACATGGTGAAGCAGAGCCTCGGCTTCCACTGGGGCCCTGGTGCCATCTCCACTTCCGTGTGGCGCGGTGTACCGTTGAGGAGCGTGCTCAAACGGTGTGGGATCTTTAGCCGCAGCAGGGGGGCCCACTATGTGTGTTTGGAAGGCGCTGACGATTTGCCAGCTGGCGGAGGGTGCAATTACGGGACCAGTATCATGAGGGAGGTTGCACTGGATCCCTCCCGCGACATCATCCTCGCTTACATGCAAAATCGGGAGCTTTTGCCCCCTGATCATGGGTTTCCAGTTCGGGTCATAGTACCGGGTTTCACCGGAGGCCGCATGGTGAAATGGTTGAAGCGCATCATTGTCACTACCCACGAATCTGATAGCTATTACCATTACCACGACAACAGAGTACTTCCCTCCCACGTTGATGCAGAGCTTGCCAACGTGGAAGGTTGGTTGTACAAGCCAGAGTATGTTATCAACGAGATGAACATAAACTCGGTGATAACGACGCCGTGCCATGATGAGATCTTACCCATCAACTCATGGACTACACAGAGGCCTTATGTACTCAGAGGCTACGCATATTCCGGGGGTGGGAGAAAGGTGACACGCGTTGAGGTGACAATGGACAGTGGTAAAACGTGGCAACTATGCATGTTGAATCATCCGGAGAAACCCAATAAATACGGTAAGTACTGGTGCTGGTGCTTCTGGTCATTGGAGGTGGAGGTATTGGACCTGCTTGGAGCTAAGGAGATTGCGGTGCGCGCCTGGGACGAGGCCCTCAACACCCAGCCTGAGAAGCTCATTTGGAATCTTATGGGCATGCTGAACAATTGCTGGTTCAAAGTGAAGATTAACGTGTGCAAGCCAAATAAGGGTGAGATTGGCATAGTGTTTGAGCACCCAATCCAACCAGGGAACCAATCTGGTGGCTGGATGGTCAAAGAGAAACAACAGGAGAAATCATCAGAGTCACACCAAACCCTCACAGATAGTGTCTCCTCACCCTTCATGAACACTAGCTCAAAAATGTACACCATGTTTGAAGTCAGAGAGCATAATAACCCTGATTCGGCTTGGATTGTCGTCCACGGACACATCTACGATTGCACCGACTACCTTAAAGACCACCCTGGTGGTGTCGATAGCATCCTCATCAACGCCGGCACCGACTGTACGGAAGAGTTTGAAGCCATCCACTCTGACACAGCCAAGAAAATACTGGAGGATTATCGAATAGGTGAGCTTGAGACCACCGGAGACACCTCTGATTCTTCCACTTCATCACCAAATAACTTCGTGCATGGAAATTCTAACATCGTCAATATGGCCCCCATTAAGGAAGTTACACCACTGCGTAGTGTGGCATTGATAAATCCACGTAAGAAAATCCCATGCAAGCTCATATCTAAAACGTCCATCTCCCACAACGTTAGGCTCTTCCGGTTTGCTTTGCCCTCTAAGGACCAACTCTTGGGTTTGCCAATAGGAAAGCACTTATTGTTATATGCCACCATTGATGGGAAGCTATGTATGCGAGCTTACACTCCAACAAGCACCAATGATGTTGTAGGATACTTCGATCTAGTGATTAAGATTTACTTCAAAGGGGCGCACCCAAAGTTCACTGATGGTGGCCTCATGTCTCAGCACTTGGAATCGCTTCCTATTGGCTCTGAGTTGGATGTGAAAGGTCCATTGGGCCACATAGAGTACATTGGTAAAGGCAATTTTCTGGTTCATGGAAAACACAAGTTTGCTAAGAGGCTAGCCATGTTGGCTGGTGGGACTGGAATCACACCCATTTACCAAGTGGTTCAAGCAATTCTGAAGGACCCAGAGGATCACACCGAAATGCATGTCCTATACGCAAACAAGACAGAAGATGATATATTGCTGAGGGAAGAGCTGGATGTGTGGGCTAAGAAGCATGAACGATTCAAGGTGTGGTACGTGGTACAAGAAAGTGCAAGAGAAGGGTGGGAATACGATGTAGGGTTAATTACAGAAAGTATCCTGAGGAAGCATATTCCACAGGCATCCCAGGACACGTTGGCATTGGCCTGTGGGACACCACCCATGATTCAGTTTGCAGTGCAGCCGAATTTGGAGAAGTTGGGTTATGACATCAAGAACAACTTGCTTTTGTTTTAG 2586 0.5 MRVKNTPKPPLLSDSSSDEEDEKLKELIRKGSAKVEASMLDPRDEGTLDHWIQRNASLVRLTGKHPFNAEPPLPKLMHHGFITPAPLHYVRNHGPVPKTHWEDWTIEVCGLVKRPAQFTMDQLVQDFPSREFPATIVCSSNRRKEQNMVKQSLGFHWGPGAISTSVWRGVPLRSVLKRCGIFSRSRGAHYVCLEGADDLPAGGGCNYGTSIMREVALDPSRDIILAYMQNRELLPPDHGFPVRVIVPGFTGGRMVKWLKRIIVTTHESDSYYHYHDNRVLPSHVDAELANVEGWLYKPEYVINEMNINSVITTPCHDEILPINSWTTQRPYVLRGYAYSGGGRKVTRVEVTMDSGKTWQLCMLNHPEKPNKYGKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEALNTQPEKLIWNLMGMLNNCWFKVKINVCKPNKGEIGIVFEHPIQPGNQSGGWMVKEKQQEKSSESHQTLTDSVSSPFMNTSSKMYTMFEVREHNNPDSAWIVVHGHIYDCTDYLKDHPGGVDSILINAGTDCTEEFEAIHSDTAKKILEDYRIGELETTGDTSDSSTSSPNNFVHGNSNIVNMAPIKEVTPLRSVALINPRKKIPCKLISKTSISHNVRLFRFALPSKDQLLGLPIGKHLLLYATIDGKLCMRAYTPTSTNDVVGYFDLVIKIYFKGAHPKFTDGGLMSQHLESLPIGSELDVKGPLGHIEYIGKGNFLVHGKHKFAKRLAMLAGGTGITPIYQVVQAILKDPEDHTEMHVLYANKTEDDILLREELDVWAKKHERFKVWYVVQESAREGWEYDVGLITESILRKHIPQASQDTLALACGTPPMIQFAVQPNLEKLGYDIKNNLLLF* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 520 530 IPR001709 GO:0016491
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 761 770 IPR001709 GO:0016491
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 773 784 IPR001709 GO:0016491
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 735 754 IPR001709 GO:0016491
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 829 837 IPR001709 GO:0016491
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 657 664 IPR001709 GO:0016491
Rops10g01855 861 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 805 821 IPR001709 GO:0016491
Rops10g01855 861 FunFam NADH-cytochrome b5 reductase 596 711 - -
Rops10g01855 861 PRINTS Cytochrome B5 reductase signature 636 647 - -
Rops10g01855 861 PRINTS Cytochrome B5 reductase signature 702 716 - -
Rops10g01855 861 PRINTS Cytochrome B5 reductase signature 829 837 - -
Rops10g01855 861 PRINTS Cytochrome B5 reductase signature 657 664 - -
Rops10g01855 861 PRINTS Cytochrome B5 reductase signature 735 754 - -
Rops10g01855 861 PRINTS Cytochrome B5 reductase signature 773 784 - -
Rops10g01855 861 SMART Cyt_b5_2 489 561 IPR001199 -
Rops10g01855 861 FunFam Nitrate reductase 304 480 - -
Rops10g01855 861 SUPERFAMILY E set domains 304 431 IPR014756 -
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 218 234 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 412 425 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 251 264 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 302 314 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 134 145 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 333 347 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 235 248 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 399 411 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 59 73 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 145 157 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 81 97 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 347 359 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 160 175 IPR008335 GO:0016491
Rops10g01855 861 PRINTS Eukaryotic molybdopterin domain signature 374 384 IPR008335 GO:0016491
Rops10g01855 861 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 605 717 IPR017927 GO:0016491
Rops10g01855 861 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 484 563 IPR036400 -
Rops10g01855 861 FunFam Nitrate reductase [NADH] 712 861 - -
Rops10g01855 861 Pfam Mo-co oxidoreductase dimerisation domain 300 431 IPR005066 GO:0016491|GO:0030151
Rops10g01855 861 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 486 561 IPR001199 -
Rops10g01855 861 Pfam Oxidoreductase NAD-binding domain 736 842 IPR001433 GO:0016491
Rops10g01855 861 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 41 302 IPR036374 -
Rops10g01855 861 Gene3D - 43 293 IPR036374 -
Rops10g01855 861 Gene3D - 482 564 IPR036400 -
Rops10g01855 861 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 517 524 IPR018506 GO:0020037
Rops10g01855 861 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 110 145 IPR022407 GO:0043546
Rops10g01855 861 PRINTS Cytochrome B5 signature 511 521 IPR001199 -
Rops10g01855 861 PRINTS Cytochrome B5 signature 521 535 IPR001199 -
Rops10g01855 861 PRINTS Cytochrome B5 signature 536 543 IPR001199 -
Rops10g01855 861 PRINTS Cytochrome B5 signature 548 560 IPR001199 -
Rops10g01855 861 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 704 855 IPR039261 -
Rops10g01855 861 Gene3D - 712 861 IPR039261 -
Rops10g01855 861 PANTHER SULFITE REDUCTASE 28 435 - -
Rops10g01855 861 PIRSF Nitr_rd_NADH 2 860 IPR012137 GO:0006809|GO:0042128|GO:0050464
Rops10g01855 861 Gene3D - 304 480 - -
Rops10g01855 861 Pfam Cytochrome b5-like Heme/Steroid binding domain 493 560 IPR001199 -
Rops10g01855 861 Pfam Oxidoreductase molybdopterin binding domain 93 272 IPR000572 -
Rops10g01855 861 FunFam Sulfite oxidase, mitochondrial 484 565 - -
Rops10g01855 861 SUPERFAMILY Riboflavin synthase domain-like 600 718 IPR017938 -
Rops10g01855 861 MobiDBLite consensus disorder prediction 1 25 - -
Rops10g01855 861 CDD cyt_b5_reduct_like 610 861 - -
Rops10g01855 861 FunFam Nitrate reductase 45 294 - -
Rops10g01855 861 Pfam Oxidoreductase FAD-binding domain 610 716 IPR008333 -
Rops10g01855 861 CDD eukary_NR_Moco 44 429 - -
Rops10g01855 861 Gene3D Translation factors 596 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01855 Rops-Chr10 34364494 34371957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01855 602 852 NADPH P450 reductases AT5G17770 39.921 9.28e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01855 K10534 - gmx:732634 1419.45