Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01844 ATGCTTTCGTTATTGTGTACCTTGTTGTTGCCGGCGATGACCGGTGTCGAATGTCACCGGTGGAAGAACATGGCGGAAGAAGAGTGTGCCGCCACCGAGGAGAGGCCTTGTCCGGAAAATTTTCTGGTGGACCAACCGGAGATTCCGAAAAACTCCGCCACGTTTGATATGGATTACTTCTCTCAGGCGAGGAAAGCCCTTAGTGAGCGTTCACCTTTTGACGTTGTTGAAGAAACGTCCACTTCTGCTGCGGTTACTCTTCCGAGTGGGTTGGCTAGTTTGTTGAACCGCCACGCTGATAACAGGAGACGTCACAAGAAGTCTCATTCCGGTGGGGAGAAGAATAAATCTTCATCCAGGGCGAATGAGAAGTCACGTGGTTCCAACATTTGGGTTGAGACAGAGGAGCACTTCAGGGACTTGAACTTGTCTGATTTAGAAACCTTGTTTGAAGCTTCTTCATGTTCTAGTTTAGCTTCTCGTGAATGTTTTTCGATTCCAGTTTTAGGTAATGCTCCAAGGTTCAATTTAGTTAGTACTACTAATTGTGAGGATGAAAAGAACCCTGCTTCAAGAATCAACATAGCTAGTGGTGAGGATGAAAAGAACCCTGCTTCAAGAATCAACATAGCTAGTGGTGAGGATGAAAAGAAGGAGAGTGAAGACTTGAAAAATGAGGATAGTTTCTTGGGAATTGAGTCAATTGACAATGTTGCTGCTGAAGAAACTCTGCCTCAGGATGAAAACAAGAATCATGATACTTCTGATTCTTGTGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCTTTAACTTCCGAGCGCCCTTCCAAGAAAAGGAGGCTTTTGGGGGGAGATGCTGGTTTGGAGAAAGTTTTGATGACTAGTCCTTGTGATGGGGACCAACCGTGTTGTCATTATTGCGGAAGGGGAGACATTGGTACTGGGAGAGATTCCAATGGATTAATTGTCTGCAGTTCTTGTAAAGTGGCAGTTCATAGAAAGTGCTATGGGGTGCAAGATGATGTAGATGAGTCTTGGTTGTGTTCTTGGTGCAAGCGAAAGGGTAATGTTGTTGATGACTCGGTGAATCCCTGTGTTCTTTGCCCAAAGAAGGGTGGCGCTTTAAAACCGGTTAATAGTAGTGTGGAAGGTGCTGGGTCTGCGCAGTTTGTGCACTTGTTTTGTTCTCTGTGGACGCCCGAAGTTTACATAGATGACTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGGCATCAAGGAAACCAGGAGAAAATTAGTATGTAATGTTTGCAAAGTGAAGTGTGGTGCATGCGTTCGGTGTAGTCATGGAACCTGCAGGACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGAGCTTTTTGCTTGAAACATTCGGATCTACAAAATAACAGAAGCATCTCTCCAATGGAAACCTCTATTGCAGTTGACCGTGATTTTTCAGAAGCCAATTGCCCTCCTGTACTATCATTGCCAGTGAACAGTGAACACAATTCGAAAATTGGTTGCGGCAATGGAGGGTTGGTGTCTGATAGTAGTCCAGACCAATCGAACCATAATGATGAACCACCAGATGGAGGATTGTCTGATTGTAGATTCAGTGCTCACACTATGTTGGGATGTGGTGCTGTGCCACAACATAATGTTCGAGTGGCAGGGAGAACCAATGAGAATGTTGATGTGTCTGACTCCCTGAGTTTTGCACTTGTTTTGAAGAAGTTGATAGATCGAGGAAAAGTTGATGTGAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACCACAAATATCAGCGAAGCTTATATGGCCCCTGATGTTCGACACAAAATAGTCAATTGGCTAAAGGCCCATGTATATACTAATGCATTCCAGAAAGGTTTAAAAGTCAAATTCAAACCAGTCAATGCATCCAAGGATGGAAGTGGAGCTACTGATGGTTCTGATACCTCACCAATATCAGATTCAGGTTTGCTGGATCCTGTTGCTGTTAAGTCTGTACCACCAAGGAGAAGAACTGTCAGTAACATTAGGATTGTGAAGGATAATAAAGTGATATGTTCATCTGAGGGAGTAACGAGTGAGAATGGGATGCCAACAGACAAGTACTCAGTACGTCAGCTGGACTGCGAACATCCAGGAAGTTCTAATGAAGCACCCATTCCTGATACCACTGAAATGAATTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGACAATGCTGAACCCCACAAATCCAGCTTATCTGGATGCATTTCAGAAGAAACATCTACTGCTTGTTTGGAGAATGCTTCCATGCTTTCTGATCAGCACTGTCCTGTTCATTCTGCTTCAGAACCTCCTGATCCTGGTTTCATAAAGATGGAAGCAATCTCTAGTTACATTCACCCATACATCAACAAGAAATTGCTACAGATTCAGGATGGGGTATCCTTGGAGGACATTACATGTTCAAGTGACGAGCAAAATTCTTCTTTGGTTGAATCCTTTGGTGCTAGTGGCTGCTCAAGTAGCCAAAGTCAGCAATTAACTTGCATTGACGTTTCCAAGCTTGATCAAGTAACTATGGAGCAGTTGGTTGGGGATAGAAAAATGGGACCTTTGGAATTTTCTCCAGAAGATGAATTGGAGGGGGAACTTATATATTTTCAGTATAGATTATTGCAGAATGCAGTTGCAAAGAAGAGGCTTGCTGATAACTTAATCTACAATGTTGCCAAGAGTTTGCCACATGAGATTGATAAAGCACATCAGCAAAGATGGGATGCTGTGATTGTCAATCAATATCTACGTGATCTTAGGGAGGCAAAAAAGCTTGGAAGAAAAGAAAGAAAGCACAAGGAAGCGCAGGCAGTATTGGCTGCTGCAACTGCTGCTGCTGCAGCATCTTCTAGGGTTTCTTCTTTCCGAAAAGACTCTGTAGATGAATCTATGCAACAGAATTTGTTAAAGTTGGATACGTTAAGTGAGAGGACTGGTGCTATTTCTCAGCCAATGCCACGAGCCAAAGAGACGCTTTCAAGAGTAACTGTGACAAGAGCTTCATCAGAGAAATATTCAGATTTTTGCTTGCCAACCTCAGATTTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGATACGAGACTATATTAAACCCTGTCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTCCACTTGGATTGCTATCGTAGTGTGAAAGAAACAATGGGTCCTTGGTACTGTGAATTATGTGAATATTTATCATCTAGAAGTTCTGGAGCATCTGCTATTAATTTCTGGGAGAAGCCTTATTTTGTTGCTGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGACTGCTGATGGTCAATGGGTTCACGCCTTCTGTGCTGAGTGGGTTTTTGAATCTACATTCATAAGAGGACAAGTAGATGCTGTTGAAGGAATGGAGACAGTGCGAAAAGGAGTTGATATTTGTTGCATTTGCCGCCGCAAGCATGGTTCATGCTTGAAATGTTGCTATGCCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTCTGTACATGAATGCGAGGACTGTTCCAGGCAAGCCGCAACACAAGGCTTACTGTGAAAAGCATAGTTTGGAGCAGAGGGAAAAGGCTGAAAGTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAAGAAAATTAGGGTTGAACTTGAGAGATTGCGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAACAAAGCGGGAGTTGGTTCTATGCTCGCATAACATACTTGCCTTTAAAAGAGATCAGGTTGCCAGGTCTGTGCTGGTTCATAGTCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGCGAAGCACACCAAAGATCAGATGACTTAACTGTGGACAGCTCAGTTTCTGCTAAACACCGTGTCAGAGTTGCCATTTCCATGGACACAGACCCAAAAGTGGATGATGACTGCTCAACCTCACAAAGTCACTATAACCACAAGATTCCGGAGAGGATGCAATTTTCTGGCAAGCAGATTCCTCACGGAGCTTCTGCTACATCACGTAATATTTCGGATGAGGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAGACCTTTGGAAAAGAGCTTGTAATGACATCGGACGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCTAACGACAAGCAGTCTAACGAGGATAATATTCGGATGCCGTGCCATTTTGCGCATGGAGTTGTATTTGAGAATGGCAAAATGGAGAGACAGGGCTCTGATCACTGTATTGTGGCAGAACGTTGCATGCTGTTCTGGAGTGGGGAAGTTTTGTTAGCGTTGTTGTACATTCGCTATGAGACTAAGCTGTACAGTGGATGA 4569 0.4316 MLSLLCTLLLPAMTGVECHRWKNMAEEECAATEERPCPENFLVDQPEIPKNSATFDMDYFSQARKALSERSPFDVVEETSTSAAVTLPSGLASLLNRHADNRRRHKKSHSGGEKNKSSSRANEKSRGSNIWVETEEHFRDLNLSDLETLFEASSCSSLASRECFSIPVLGNAPRFNLVSTTNCEDEKNPASRINIASGEDEKNPASRINIASGEDEKKESEDLKNEDSFLGIESIDNVAAEETLPQDENKNHDTSDSCVSLEWFLGCRNKVSLTSERPSKKRRLLGGDAGLEKVLMTSPCDGDQPCCHYCGRGDIGTGRDSNGLIVCSSCKVAVHRKCYGVQDDVDESWLCSWCKRKGNVVDDSVNPCVLCPKKGGALKPVNSSVEGAGSAQFVHLFCSLWTPEVYIDDLKKMEPVMNVGGIKETRRKLVCNVCKVKCGACVRCSHGTCRTSFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLQNNRSISPMETSIAVDRDFSEANCPPVLSLPVNSEHNSKIGCGNGGLVSDSSPDQSNHNDEPPDGGLSDCRFSAHTMLGCGAVPQHNVRVAGRTNENVDVSDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTTNISEAYMAPDVRHKIVNWLKAHVYTNAFQKGLKVKFKPVNASKDGSGATDGSDTSPISDSGLLDPVAVKSVPPRRRTVSNIRIVKDNKVICSSEGVTSENGMPTDKYSVRQLDCEHPGSSNEAPIPDTTEMNLTKSEDIFHEVQDNAEPHKSSLSGCISEETSTACLENASMLSDQHCPVHSASEPPDPGFIKMEAISSYIHPYINKKLLQIQDGVSLEDITCSSDEQNSSLVESFGASGCSSSQSQQLTCIDVSKLDQVTMEQLVGDRKMGPLEFSPEDELEGELIYFQYRLLQNAVAKKRLADNLIYNVAKSLPHEIDKAHQQRWDAVIVNQYLRDLREAKKLGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDSVDESMQQNLLKLDTLSERTGAISQPMPRAKETLSRVTVTRASSEKYSDFCLPTSDFSKEQRKSCDICRRYETILNPVLVCSGCKVAVHLDCYRSVKETMGPWYCELCEYLSSRSSGASAINFWEKPYFVAECALCGGTTGAFRKTADGQWVHAFCAEWVFESTFIRGQVDAVEGMETVRKGVDICCICRRKHGSCLKCCYAHCQTTFHPSCARSAGLYMNARTVPGKPQHKAYCEKHSLEQREKAESQKHGIEELKSIKKIRVELERLRLLCERIVKREKTKRELVLCSHNILAFKRDQVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEAHQRSDDLTVDSSVSAKHRVRVAISMDTDPKVDDDCSTSQSHYNHKIPERMQFSGKQIPHGASATSRNISDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKQSNEDNIRMPCHFAHGVVFENGKMERQGSDHCIVAERCMLFWSGEVLLALLYIRYETKLYSG* 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01844 1522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1133 1243 IPR013083 -
Rops10g01844 1522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 488 IPR013083 -
Rops10g01844 1522 ProSiteProfiles Extended PHD (ePHD) domain profile. 1133 1242 IPR034732 -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 211 226 - -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 1398 1412 - -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 531 550 - -
Rops10g01844 1522 SUPERFAMILY FYVE/PHD zinc finger 1062 1113 IPR011011 -
Rops10g01844 1522 ProSitePatterns Zinc finger PHD-type signature. 307 354 IPR019786 -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 97 129 - -
Rops10g01844 1522 PANTHER PHD FINGER PROTEINS 106 1007 - -
Rops10g01844 1522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 363 IPR013083 -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 1398 1421 - -
Rops10g01844 1522 ProSiteProfiles Zinc finger PHD-type profile. 1065 1114 IPR019787 -
Rops10g01844 1522 SMART PHD_3 1067 1112 IPR001965 -
Rops10g01844 1522 SMART PHD_3 430 486 IPR001965 -
Rops10g01844 1522 SMART PHD_3 1188 1242 IPR001965 -
Rops10g01844 1522 SMART PHD_3 306 355 IPR001965 -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 531 556 - -
Rops10g01844 1522 Pfam PHD-zinc-finger like domain 1135 1241 - -
Rops10g01844 1522 Pfam PHD-zinc-finger like domain 367 485 - -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 1320 1338 - -
Rops10g01844 1522 ProSiteProfiles Zinc finger PHD-type profile. 304 357 IPR019787 -
Rops10g01844 1522 ProSiteProfiles Extended PHD (ePHD) domain profile. 365 486 IPR034732 -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 185 226 - -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 670 684 - -
Rops10g01844 1522 CDD ePHD 1136 1241 - -
Rops10g01844 1522 Coils Coil 1262 1282 - -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 1320 1350 - -
Rops10g01844 1522 ProSitePatterns Zinc finger PHD-type signature. 1068 1111 IPR019786 -
Rops10g01844 1522 MobiDBLite consensus disorder prediction 664 693 - -
Rops10g01844 1522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1057 1116 IPR013083 -
Rops10g01844 1522 SUPERFAMILY FYVE/PHD zinc finger 298 356 IPR011011 -
Rops10g01844 1522 Pfam PHD-finger 1079 1112 - -
Rops10g01844 1522 Pfam PHD-finger 322 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01844 Rops-Chr10 34118092 34131371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01844 301 506 C2H2 Transcription Factor Family AT3G14740 28.230 3.13e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01844 - - gmx:100775631 2185.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01844 10 34118092 34131371 Rops10g01844 10 34118092 34131371 ECH