Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01839 ATGTTGCTAGGATTTATCACAGGCATTTCAACAGTAATAACAGTGGCCTTATTGAATTGTCTCTTCAGGAGAAAGGTTATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGGGAAGGAATGTGAAAATTTGAATTATGACAAAATACCATTAAGGCGTTTTGATTTTGAGGAACTAGAGAGGGCTACCAAAAATTTTAGCCTAGATTGCTTACTGGGTTCTGGTGCATTTGGAAATGTCTACAAGGGAACCTTTGACTTAGAAGGAACACTAGCCATAAAGAGAGCTCATTCTGAATCATTCATAAGTGTGGAAGAATTTATAAATGAAGTTAGGCTCCTTTCAGCAGTAAAGCACATGAATCTTGTTAGTCTGGTTGGATATTGTGAAGAACCAGAACGAGAAGGAGCCAAAATACTAGTATATGAATATGTACCAAATGGTTCACTCCTTGAGTACATGATGGGCATAGCTTATTTGCATGAAGGAGAGAAGCCAAGTATAATTCATCGTGACATTAAACCAAGTAACATACTATTAGAGGAAGGTTTTGAGGCTAAGGTTTCAGATTTTGGGCTGGTAAAATCAGGGCCTACTGGGGATCAATCACATGTCAGTAGCCAAATTAAGGGGACACCAGGGTATCTTGACCCTGCTTATTGTTCAAGCTTCCATTTGACAAAATTCAGTGATGTTTATAGCTTTGGTATCATACTTTTGCAACTTGTTTCAACTAGACATGCTGTGGATTCCAATGAAAACCAAAGCAATCAACATATTATTGATTGGCTTGGAGAGGCTGATATTGCAATGAACAATCTAAATAGTTCATTAATCTCTCTTATGATTAAGGAAGCTGGATTGCGTGCAGCTCAGCATGGTGCTCTGGGTTTTGAAATGCATGCATTCCCATAA 915 0.3792 MLLGFITGISTVITVALLNCLFRRKVIPFLKQRKTLKGKECENLNYDKIPLRRFDFEELERATKNFSLDCLLGSGAFGNVYKGTFDLEGTLAIKRAHSESFISVEEFINEVRLLSAVKHMNLVSLVGYCEEPEREGAKILVYEYVPNGSLLEYMMGIAYLHEGEKPSIIHRDIKPSNILLEEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGIILLQLVSTRHAVDSNENQSNQHIIDWLGEADIAMNNLNSSLISLMIKEAGLRAAQHGALGFEMHAFP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01839 304 Pfam Protein kinase domain 153 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01839 304 SUPERFAMILY Protein kinase-like (PK-like) 51 262 IPR011009 -
Rops10g01839 304 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Rops10g01839 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Rops10g01839 304 Gene3D Transferase(Phosphotransferase) domain 1 148 288 - -
Rops10g01839 304 ProSiteProfiles Protein kinase domain profile. 66 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01839 304 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 144 - -
Rops10g01839 304 SMART serkin_6 66 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01839 304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 273 - -
Rops10g01839 304 Gene3D Phosphorylase Kinase; domain 1 29 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01839 Rops-Chr10 34067407 34080095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01839 47 263 Glycoside Hydrolase AT3G07070 40.664 1.62e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Rops10g01839 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01839 - - gmx:106794267 431.795