Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01838 ATGCCTCGCCAACTTCCTCCGCCGCAGCAGCAGCAGCAGCAACCGCAGCCTCGCCTTCTGGACGCTAAAATCTGGCGAGCATGTGCTGGTGTTTCCGTCCAAATCCCCACCGTGAATTCTAGGGTTTACTACTTCCCTCAGGGGCATATGGACCAAGCCTCTTCACCTCCTCAGCATCTTTCTCCTCTTCTTCTATCAAGGCCATACATCCTCTGCCGTATCTCCGCCGCTCAATTCCTCGCCGATCCACTCACCGACGAGGTCTTCGCGAAACTGTTGCTTCACCCTATCACCGATTATTCCGCTTATCCTCCTCGTGTTCATCCTCAGGAGGATGATGAAAACAACAAGGTTGTTTCCTTCGCGAAGATTCTCACGCCTTCTGATGCTAACAATGGCGGCGGATTTTCAGTCCCGAGGTTCTGTGCCGATTCGATTTTTCCAGCGCTGGACTTCAATGCCGACCCGCCGGTGCAGAACTTGTCCATCACCGACGTCCACGGCGTGGTCTGGGAGTTCCGTCATATCTACCGTGGAACCCCGAGAAGGCACTTGCTCACCACTGGATGGAGCAAGTTTGTTAATAGCAAGAAGCTAGTTGCCGGCGATTCCGTGGTTTTCATGAAGAACCCAAGGGGGGAGATGTTCGTCGGGATTCGCCGTGCGGCACGATTCGCTTCCACAAACTGCAGCGATGGTGGCAGAAGGTACTTGCCGCCGTTCGGTATAAGAAACAGGGTTGAGGAGGATCATCCGCAGGAAGAGAAGGCGAAAGAGGGGTTTTCGAGGAACGGGAAGGGGAAACTGTCGCCAAAGACGGTTCTCGAAGCAGCGGAGTTGGCGGCACAGAACATGCCGTTTGAGGTTGTGTATTATCCTCGGGTTGGGTGGTCGGAATTTGTGGTGAAGGCGGAGGTTGTGGATGAAGCAATGAGTGTTGTGTGGAGTCCTGGAATGAGAGTGAAAATGGCTGCGGAGACTGATGATTCTTCTAGAATGACATGGTTTCAGGGTTTAGTGTCTGCAGTCTCTGTTCCTCCTGATAATGCCCATTGGCGAGGTTCTCCTTGGCGAATGCTTCAGGTTAAATGGGATGAGCCAGAAGTGCTGCAAAATTCCAAGTGGGTCAGCCCTTGGCAGGTCGAACTTGTTTCCACCACACCTGCACTTCATACACCATTCCCCCCATTGAAAAAGTTTAGAGCTGCTACTGATGGAGAGGGAGACCCCTTTACTATGACAAGATTCACTAATTCAACAATGGGACACTTGAGTCAAACATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTACCAAGTGATAACTCTCGTCTGTGTATGGGTAGTTCCTTGGGGAACAACTCAGTGCTGAAATTGAAAACTTTGTCAACAGAGCTAAATGTTGGCTGTTCTCAATCTGATGACTTGTCACCAGATAGCCAGAGTAGTTTGCATTCCTCTGGCACAGAATTTGTTGGGCACCACAACTGCAGCTCAACAAAATCTGGGTCTGTTTCATTTCAGCTATTTGGTGCAGTCATTCAAACAAAACAGCCTGTTGAAAGTGGTTTGCATGGTACTGGTTGCACAGAAGATGACAGCAGTAAAGGCTGCAATGAAACTGAAGGCATTGACAACCCACTGGATCATTCTTTGACTTACTCGAAATTACTTGACAGGCTTGATGACCAATGCCAAAGAGCCTCGACAGTTGAGGCATGTTATTTGTGA 1779 0.4975 MPRQLPPPQQQQQQPQPRLLDAKIWRACAGVSVQIPTVNSRVYYFPQGHMDQASSPPQHLSPLLLSRPYILCRISAAQFLADPLTDEVFAKLLLHPITDYSAYPPRVHPQEDDENNKVVSFAKILTPSDANNGGGFSVPRFCADSIFPALDFNADPPVQNLSITDVHGVVWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFMKNPRGEMFVGIRRAARFASTNCSDGGRRYLPPFGIRNRVEEDHPQEEKAKEGFSRNGKGKLSPKTVLEAAELAAQNMPFEVVYYPRVGWSEFVVKAEVVDEAMSVVWSPGMRVKMAAETDDSSRMTWFQGLVSAVSVPPDNAHWRGSPWRMLQVKWDEPEVLQNSKWVSPWQVELVSTTPALHTPFPPLKKFRAATDGEGDPFTMTRFTNSTMGHLSQTLLSYGTFPAGMQGARHDLFSASSFSNLPSDNSRLCMGSSLGNNSVLKLKTLSTELNVGCSQSDDLSPDSQSSLHSSGTEFVGHHNCSSTKSGSVSFQLFGAVIQTKQPVESGLHGTGCTEDDSSKGCNETEGIDNPLDHSLTYSKLLDRLDDQCQRASTVEACYL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01838 592 SUPERFAMILY DNA-binding pseudobarrel domain 114 229 IPR015300 -
Rops10g01838 592 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 550 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops10g01838 592 FunFam Auxin response factor 119 223 - -
Rops10g01838 592 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Rops10g01838 592 SMART B3_2 121 223 IPR003340 GO:0003677
Rops10g01838 592 Pfam Auxin response factor 277 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops10g01838 592 CDD B3_DNA 120 221 IPR003340 GO:0003677
Rops10g01838 592 MobiDBLite consensus disorder prediction 249 265 - -
Rops10g01838 592 Gene3D - 118 223 IPR015300 -
Rops10g01838 592 MobiDBLite consensus disorder prediction 249 268 - -
Rops10g01838 592 Gene3D - 315 389 - -
Rops10g01838 592 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01838 Rops-Chr10 34050452 34055712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01838 5 558 B3 DNA Binding Superfamily AT1G77850 48.438 1.86e-172 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops10g01838 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01838 - - qsu:112025063 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01838 10 34050452 34055712 Rops10g01838 10 34050452 34055712 ECH