Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01830 ATGGACATATATGAGCCATTCCAGCAAATTAGCATGTGGGGGGACAGCTTTAAAGTTGAAGGTGGCCTAAATTCAATTGCTTCCCCAGTGTTGGTGAACACTAGCATGGAGACCAAGCCTGAATATATAACTCATGAATCAAGGGAGCCTTCTGGTGCTCATCATGAGACTCCGAATAAAGATGTTAGCAAGGTGCTAAGACGCCTTGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTGCGAAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTAATGCAGTTGGAACTGGAGATGGGGAAAGCAAGACAGCAGGGTCTGTACATTGGCAGTGCATTAGACTCCAGTTATATAGGATCATCCGAAACAATAAATCCAGGGATTGTTACATTTGAAATTGGCTATGGACATTGGGTTGAAGAACTACAGGGGCAGAATGAAGAACTGAGGAATGCATTTCAAAATCATGCATCTGATGAAGTACAGCTCCGTTTACTTGTTCAGAGTGTTTTGAACCAATACTCAAAACTTTTTAGAATGAAAGCAGATGCTGCTAAGGCTGATGTCCTCTATTTAATCTCTGGTGTATGGAAAGCATCAGCAGAGCGCATTGTCCTTTGGATTGGAGGATCTCGCCCATCACAGCTTCTAAATCTTATAGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGCTCGTATTAACAACCTCCGCCAATCATCTCAGCAAGCTGAAGATGCTCTCTCACAAGGATTGGATAAACTCCAGCAGAGTCTGGTCCAGGACATGGCAGTTGATCCATTGGGTGTGGAAAACTTTAGATTTCAGATGACTGTTGCCATAGGGAAATTTGAGGCACTAGAAGGTTTTGTAAACCAGGCTGATCACCTTAGGCAACAAACTCTGCTGCACATGTCACGCATCTTGTCAACTCACCAAGCTGCTCGAGGCTTGCTAGCTCTAGGGGATTACTTTCACCGTCTTCGTACTCTTTGGACTACTCGTCCATGTGATCCTTCTTAA 1041 0.439 MDIYEPFQQISMWGDSFKVEGGLNSIASPVLVNTSMETKPEYITHESREPSGAHHETPNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEMGKARQQGLYIGSALDSSYIGSSETINPGIVTFEIGYGHWVEELQGQNEELRNAFQNHASDEVQLRLLVQSVLNQYSKLFRMKADAAKADVLYLISGVWKASAERIVLWIGGSRPSQLLNLIVPQLEPLTDQQIARINNLRQSSQQAEDALSQGLDKLQQSLVQDMAVDPLGVENFRFQMTVAIGKFEALEGFVNQADHLRQQTLLHMSRILSTHQAARGLLALGDYFHRLRTLWTTRPCDPS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01830 346 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Rops10g01830 346 ProSiteProfiles DOG1 domain profile. 133 344 IPR025422 GO:0006351|GO:0043565
Rops10g01830 346 MobiDBLite consensus disorder prediction 43 62 - -
Rops10g01830 346 SUPERFAMILY Leucine zipper domain 64 97 IPR046347 GO:0003700|GO:0006355
Rops10g01830 346 FunFam BZIP family transcription factor 63 112 - -
Rops10g01830 346 Coils Coil 144 164 - -
Rops10g01830 346 Gene3D - 63 113 - -
Rops10g01830 346 SMART brlzneu 60 120 IPR004827 GO:0003700|GO:0006355
Rops10g01830 346 Coils Coil 83 110 - -
Rops10g01830 346 Pfam Seed dormancy control 152 226 IPR025422 GO:0006351|GO:0043565
Rops10g01830 346 PANTHER TRANSCRIPTION FACTOR TGA9 1 342 - -
Rops10g01830 346 Pfam bZIP transcription factor 64 93 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01830 Rops-Chr10 33991418 33995401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01830 1 346 Calmodulin-binding Proteins AT1G77920 52.044 1.24e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops10g01830 DOG1 7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01830 K14431 - gmx:100775332 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01830 10 33991418 33995401 Rops10g01830 10 33991418 33995401 ECH
Rops9g01546 9 26562969 26567294 Rops10g01830 10 33991418 33995401 PCT