Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01821 ATGTCGTCGTCGTTGAATTCTCCGTGTGCAGCGTGCAAGATTCAGCGGAGGAAGTGCACCCAGGAATGCATTTTCGCACCGTATTTTCCGCCGGACAACCCTCAAAGGTTCGCGTACGTTCACAAAGTGTTCGGGGCAAGCAACGTGGCCAAGCTTCTGAACGAGGTGGACGCGGCACATCGTGAAGACGCCGTGAAGTCACTGGCTTATGAGGCGGAAGCACGGTTGCGGGACCCAGTGTACGGTTGTGTAGGACTGATATCCCTTTTGCAGCATAAGCTGAAGCACTTGCAGACTGAACTCAACCTTGCCAAGAAGGAACTTGCTTCCTATATTGGTCCTCATGCCATGCTTCCACCACAACCACCACCATCTCGTAACCCTTCTCTTTTCCCCTTCAATACCATTACTCCTCAATCTCAAGATCTTTTCAGGTTCAACCATGAAGGACCTTCTTCCACTTCCTACATCTCACTCCCTCGAGGACCCCCTGATCACTCTCTTTCTCTTCATCATCATTCCCTTTTGTCCCCCAAGCAACAGGGTAGGAGGACCATCGCTCCATCTGGTTGA 573 0.5148 MSSSLNSPCAACKIQRRKCTQECIFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEVDAAHREDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLKHLQTELNLAKKELASYIGPHAMLPPQPPPSRNPSLFPFNTITPQSQDLFRFNHEGPSSTSYISLPRGPPDHSLSLHHHSLLSPKQQGRRTIAPSG* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01821 190 Coils Coil 87 107 - -
Rops10g01821 190 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Rops10g01821 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 130 - -
Rops10g01821 190 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01821 Rops-Chr10 33876260 33876832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01821 1 176 AS2 family AT5G66870 60.227 1.08e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops10g01821 LOB 2.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01821 - - gmx:100812543 239.195