Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01817 ATGAGACTTGGAGAGCAGGAAAACTTCCATCTTGAGGATACTGGTCAAACAGAGAGGTCCCTTTGGGTGCTGAATTCTCCCAATCCACCACCTCTATGGAAGAAGCTATTTAGTCTTTTGAAGAACCCCAAATTCTTTTCATCCAACAAAAAAACTTGCAACCAACGTGCTGTATCATTCTTGAAGAGTTTATTCCCTATCCTCAGCTGGTTTAGAAATTACAAAGCCTCCAAGTTTAAAGATGATTTGCTAGCAGGTTTAACTCTTGCCAGCCTAAGCATACCTCAGAGTATAGGATATGCTAATTTAGCAGGACTTGATCCTCAATATGGCCTATACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGCTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTGTCATTGCTGCTATCCTCCCTGGTCCAGAAAGTGGTTGATCCTGCGGCAAATCATGATGCCTACAGAAATGTTGTCTTTACTGTGACTTTCTTTGCTGGAATCTTTCAAGCTGCATTTGGAATTTTCAGGTTGGGCTTTCTTGTGGATTTTCTTTCACATGCTGCCCTTGTAGGATTCATGGCAGGCGCAGCTATCATTATTGGTCTTCAGCAGCTCAAGGGGTTGCTGGGGCTTAATCACTTTACCACCAAAACTGATGCAGTAGCGGTATTGGAATCTGTTTATAAGTCACTCCATCATCAAATTACATCCGAAGAAAAATGGTACCCTCTTAATTTTGTCATCGGATGTTCATTCCTGATTTTCCTCTTAGTTGCCCGATTTCTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCTGCTATTGCTCCTCTTCTATCAGTTATATCATCAACTATTATTGTGTATTTGTCAAAAGCTGATAAGCATGGGGTTAATATAATAAAGCATGTCAAAGGAGGCCTTAATCCAAGCTCAGCTCACCAGTTACAATTCAACAGTCAACATGTTGGACAAGCAGCTAAAATTGGATTGATCTCTGCTGTTATTGCTCTTACTGAAGCAATCGCTGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGAAACAAAGAAATGTTAGCAATGGGCTGCATGAACATTGCAGGATCTTTCACTTCATGCTATGTGGCAACTGGCTCTTTTTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAATATCAAATATTGTGATGGCTGTTACTGTGCTTCTGTGCCTGGAATTGTTTACAAGGCTCTTATATTATACTCCTATGGCCATACTTGCTTCTATCATCCTCTCGGCACTACCTGGATTAATTGACATAGGTGAAGCTTGTTATATCTGGAAGGTTGACAAATTGGACTTTCTGGCATGCATTGGAGCTTTCTTTGGCGTCTTGTTTGTATCGGTAGAAATTGGTCTTCTTATTGCAGTGGCAATCTCATTTGGGAAGATACTAATACAATCAATTCGACCCGGGTTAGAAGTTCTAGGTAGAATTCCAAGAACTGAAGCCTTCTGCGATGTTAGTCAATATCCCATGGCCACAAGCACTCCAGGCATCTTGGTCATTCGCATAAGCTCTGGCTCACTCTGCTTTGCTAATGCTAATTTTGTTAGAGAAAGAATACTGAAGTGGGTTACTAAAGAAGAAGAAGATAGTCATAAAGAAACTGCCAAGGCAATAATCTTAGACATGACCAACATGATGAATGTTGATACTTCCGGGATTCTAGCATTGGAGGAACTGCACAAGAGGTTGCTTTCACGTGGCGTAGAATTGGCTCTGGTCAACCCAAGATGGCTGGTAATTCACAAGCTTAAACTGGCACACTTTGTGGATAAAATCGGAAAACAATGGGTTTTCCTTACTGTTGCTGAAGCCGTAGATGCGTGCCTGTCTTCTAAATTTGCTGAACCATGA 1941 0.4132 MRLGEQENFHLEDTGQTERSLWVLNSPNPPPLWKKLFSLLKNPKFFSSNKKTCNQRAVSFLKSLFPILSWFRNYKASKFKDDLLAGLTLASLSIPQSIGYANLAGLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVQKVVDPAANHDAYRNVVFTVTFFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGLNHFTTKTDAVAVLESVYKSLHHQITSEEKWYPLNFVIGCSFLIFLLVARFLGRRNKKLFWLPAIAPLLSVISSTIIVYLSKADKHGVNIIKHVKGGLNPSSAHQLQFNSQHVGQAAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSFTSCYVATGSFSRTAVNFSAGCQTSISNIVMAVTVLLCLELFTRLLYYTPMAILASIILSALPGLIDIGEACYIWKVDKLDFLACIGAFFGVLFVSVEIGLLIAVAISFGKILIQSIRPGLEVLGRIPRTEAFCDVSQYPMATSTPGILVIRISSGSLCFANANFVRERILKWVTKEEEDSHKETAKAIILDMTNMMNVDTSGILALEELHKRLLSRGVELALVNPRWLVIHKLKLAHFVDKIGKQWVFLTVAEAVDACLSSKFAEP* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01817 646 ProSiteProfiles STAS domain profile. 534 638 IPR002645 -
Rops10g01817 646 CDD STAS_SulP_like_sulfate_transporter 518 631 - -
Rops10g01817 646 ProSitePatterns SLC26A transporters signature. 108 129 IPR018045 GO:0008271|GO:0008272
Rops10g01817 646 Gene3D STAS domain 497 641 IPR036513 -
Rops10g01817 646 SUPERFAMILY SpoIIaa-like 522 638 IPR036513 -
Rops10g01817 646 PANTHER SULFATE TRANSPORTER 47 639 IPR001902 GO:0016020|GO:0055085
Rops10g01817 646 Pfam STAS domain 518 634 IPR002645 -
Rops10g01817 646 NCBIfam sulfate permease 66 634 IPR001902 GO:0016020|GO:0055085
Rops10g01817 646 Pfam Sulfate permease family 79 465 IPR011547 GO:0016020
Rops10g01817 646 FunFam Sulfate transporter 31 497 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01817 Rops-Chr10 33792332 33797627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01817 16 642 Inorganic Solute Cotransporters AT5G10180 63.323 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01817 K17469 - gmx:100805269 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01817 10 33792332 33797627 Rops10g01817 10 33792332 33797627 ECH
Rops9g01532 9 26172649 26177725 Rops10g01817 10 33792332 33797627 PCT