Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01816 ATGTCTTCAATGGGTCTTCCTGCTGATGAAAGTCTTGATACAAAAGAGATGGATGCGAGAAGTTTGTCATCTTCACATGGTCAGGCACCATACGTCCACAGAGTGGAAATTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAAGCTGCTGTAAAAGAAACATTCTTTGCTGATGATCCTCTACGATCCTTCAAAGATCAATCTAAGTCAAGGAAGTTCATCCTTGGAATTGAGGCCATATTCCCCATACTTAATTGGGGGAGAACCTACAATCTTAAACAATTTAGGGGTGATATTATATCTGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATATGCCAAGCTTGCACATTTGGCTCCACAGTATGGACTGTACTCCAGCTTTGTTCCACCACTGATTTATGCTGCCATGGGTAGTTCTCGTGATATTGCAATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGGACTTTACTAAGTAATGAGATTGATCCTGTTAAGCATGCAGCGGAATATCAGCGACTTGCTTTTACAGCCACTTTTTTTGCTGGGATCACCCAAGCAACGCTTGGGATTTTGAGGTTAGGATTTTTGATTGACTTCCTATCTCATGCTGCTATTGTCGGTTTTATGGGGGGTGCTGCCATCACGATTGCACTTCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTAAATTGTTCACAACGAAAACTGATATTGTCTCTGTGATGGATTCAATATTCTCAACAGCCCATCATGGATGGAACTGGCAAACTATCTTAATCGGAGCTAGCTTTTTGGGTTTTCTTCTGGTGGCCAAATATATTGGAAAGAAGAACAAGAAATACTTCTGGGTGCCAGCAATCGCCCCATTGATATCCGTTGTGCTGTCCACTTTTTTTGTGTTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTACGTCATATAGAGAAAGGGATCAATCCTTCATCTGTTAAAAAAATTTATTTTAGCGGTGAATACCTTGGGAAAGGTTTTAGAATTGGCATCGTGGCAGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCAACTATGAAGGACTATCAGCTGGATGGAAACAAAGAAATGGTAGCATTAGGAGCAATGAATGTTGTTGGTTCCATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGATCAGCGGTAAATTTCATGGCTGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAATAGTGGTGTTTTTAACCCTGGAATTCATCACTCCTCTTTTTAAGTACACTCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAACCTTGTGGACTATCAGGCAGCAATTTTGATTTGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCATTCTTTGGGGTTGTTTTTAAATCAGTTGAGATAGGACTTCTAATTGCTGTATCCATATCCTTTGCAAAGATCCTACTACAAGTCACGAGGCCCCGGACTGCTATTCTGGGGAAGATTCCTAGGACTTCTGTCTATAGAAACATCCAACAATACCCAGAAGCTAGTAAGCTTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTCAAAGAGAGGATATTAAGATGGCTGATAGATGAAGAAGAACAAGTCAAAGGAGACTACCACACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGACATCGACACCAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAAGGTGTTGAGCTTGTTCTGGCAAATCCTGGTCCGGTAGTGACAAACAAGCTTTACACATCCAATTTTGCTAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCAGAAGCTGTTGCATGCTGTTCTCCAAAGCTGGCCGAGGACCCATGA 1983 0.4165 MSSMGLPADESLDTKEMDARSLSSSHGQAPYVHRVEIPPRQNLFKEFQAAVKETFFADDPLRSFKDQSKSRKFILGIEAIFPILNWGRTYNLKQFRGDIISGLTIASLCIPQDIGYAKLAHLAPQYGLYSSFVPPLIYAAMGSSRDIAIGPVAVVSLLLGTLLSNEIDPVKHAAEYQRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTKLFTTKTDIVSVMDSIFSTAHHGWNWQTILIGASFLGFLLVAKYIGKKNKKYFWVPAIAPLISVVLSTFFVFITRADKQGVEIVRHIEKGINPSSVKKIYFSGEYLGKGFRIGIVAGMIALTEATAIGRTFATMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSIVVFLTLEFITPLFKYTPNAILSAIIISAVINLVDYQAAILIWKIDKFDFVACMGAFFGVVFKSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTSVYRNIQQYPEASKLPGVLIVRVDSAIYFSNSNYVKERILRWLIDEEEQVKGDYHTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKKGVELVLANPGPVVTNKLYTSNFANTIGEDKIFLTVAEAVACCSPKLAEDP* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01816 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Rops10g01816 660 Pfam Sulfate permease family 95 477 IPR011547 GO:0016020
Rops10g01816 660 MobiDBLite consensus disorder prediction 1 27 - -
Rops10g01816 660 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Rops10g01816 660 Gene3D STAS domain 509 655 IPR036513 -
Rops10g01816 660 PANTHER SULFATE TRANSPORTER 41 653 IPR001902 GO:0016020|GO:0055085
Rops10g01816 660 NCBIfam sulfate permease 82 648 IPR001902 GO:0016020|GO:0055085
Rops10g01816 660 FunFam Sulfate transporter 31 509 655 - -
Rops10g01816 660 Pfam STAS domain 530 648 IPR002645 -
Rops10g01816 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Rops10g01816 660 SUPERFAMILY SpoIIaa-like 531 653 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01816 Rops-Chr10 33752866 33757930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01816 1 659 Inorganic Solute Cotransporters AT1G22150 74.962 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01816 K17470 - gmx:100804208 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01816 10 33752866 33757930 Rops10g01816 10 33752866 33757930 ECH
Rops9g01530 9 26132508 26139139 Rops10g01816 10 33752866 33757930 PCT