Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01803 ATGTTGAAAAGGACAGGGTCACCCCTTGGGGCCCACTTTGATGACGTCAGCAACGGTTCTACGCGGCAGAAGCGTCGGCAGGTAGGAGGGAACAGTAACAGCACTCGCGATGAGCCTCGTGAAACTTGTTCATGGCAGGAGCCAGGATGTACTGAAGCAAACTTGCAAGGATTTTTCGAAAGCCAGGTGTTTTCAGAATCGAGATCCAGTGATAACCCAGTTAGTACGTGTTCCTCAGTTTTAGAAAGACGCAGGTTTAATTTTATCATGGCAGCTATGATGGATTTTTACAACAGCACACAACTTCACTCAGATCCCTTCAGAGGTGAGCTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCCTCTCCTTCTTCTTCTCCTTCTCCCTCTTTAACCTCATCTCCTTGTTCAAACTCATATCTACCTTCTACTTCTTACTCTCCTTCTCCCAACTCCTTCCACTCCTCTCCCTCCCTCCCTACCCACCCAACTTTCTACACAGATGGTTGCTCAACATCGATGACCCATTTATTTGCAAACGGGTTATCCAACAGCCAAAATTTCATAGGCTTTGGGCAACCAAGTTCAGTTCTTGGCCTCAACCACCTAACCCCATCTCAGATCAATCAGATCCAAGCTCAGATCCAGCACCAGAACTTGTCATGGCAGCAAAATCAGCATCATAACACCCTCAGCTTCCTTGGTCCCAAGCCAATCCCTATGAAGCACGTGGGCATGTCTCAAAAGCCCACCAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGAAAATGGGTCGCTGAGATCAGACTCCCTAAGAACCGCACAAGGCTCTGGCTCGGTACCTTTGACACTGCTGAAGAAGCTGCACTTGCTTATGACAAAGCCGCTTACAAGCTCAGAGGTGACTTTGCTAGGCTCAACTTTCCCAACCTCCGACACCAAGGTTCTTCTGTTGGTGGGGAATTTGGGGAATACAAGCCTCTTCATTCCTCTGTTGATGCTAAGCTTGAGGCTATTTGTGAAGGCTTGGCTGATATGAAGAAACAAGGGAAATCAGAGAAGCCTCCGAGATCATCCAAGAGGTCAAAAATGGCCTCAAAGGTGAAGGAGCATGAGGTTGATCTGAAGAAGGGATTGGAGAACTCTTGCAAGGTTGAAGCTTCCACGTCTCCGGTGATGACTGAGAGCGAGGGATCTGAAGGTTCTTCACCCCTTTCGGATCTGACCTTTGAAGATGTTGGTGAGCCACAGTGGGAAGGTGATTCGGATAATTTTAATCTGCTCAAGTACCCCTCTTATGAGATCGATTGGGATTCTCTGTGA 1341 0.4795 MLKRTGSPLGAHFDDVSNGSTRQKRRQVGGNSNSTRDEPRETCSWQEPGCTEANLQGFFESQVFSESRSSDNPVSTCSSVLERRRFNFIMAAMMDFYNSTQLHSDPFRGELMEVLEPFMKSPSSTPSPSSSPSPSLTSSPCSNSYLPSTSYSPSPNSFHSSPSLPTHPTFYTDGCSTSMTHLFANGLSNSQNFIGFGQPSSVLGLNHLTPSQINQIQAQIQHQNLSWQQNQHHNTLSFLGPKPIPMKHVGMSQKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGEFGEYKPLHSSVDAKLEAICEGLADMKKQGKSEKPPRSSKRSKMASKVKEHEVDLKKGLENSCKVEASTSPVMTESEGSEGSSPLSDLTFEDVGEPQWEGDSDNFNLLKYPSYEIDWDSL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01803 446 MobiDBLite consensus disorder prediction 1 47 - -
Rops10g01803 446 SMART rav1_2 258 321 IPR001471 GO:0003700|GO:0006355
Rops10g01803 446 ProSiteProfiles AP2/ERF domain profile. 258 315 IPR001471 GO:0003700|GO:0006355
Rops10g01803 446 Gene3D AP2/ERF domain 258 316 IPR036955 GO:0003700|GO:0006355
Rops10g01803 446 FunFam Ethylene-responsive transcription factor 2 257 316 - -
Rops10g01803 446 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 93 446 - -
Rops10g01803 446 MobiDBLite consensus disorder prediction 352 427 - -
Rops10g01803 446 MobiDBLite consensus disorder prediction 120 141 - -
Rops10g01803 446 MobiDBLite consensus disorder prediction 389 412 - -
Rops10g01803 446 Pfam AP2 domain 259 307 IPR001471 GO:0003700|GO:0006355
Rops10g01803 446 MobiDBLite consensus disorder prediction 14 39 - -
Rops10g01803 446 MobiDBLite consensus disorder prediction 352 387 - -
Rops10g01803 446 CDD AP2 257 317 IPR001471 GO:0003700|GO:0006355
Rops10g01803 446 PRINTS Ethylene responsive element binding protein signature 281 297 IPR001471 GO:0003700|GO:0006355
Rops10g01803 446 PRINTS Ethylene responsive element binding protein signature 259 270 IPR001471 GO:0003700|GO:0006355
Rops10g01803 446 MobiDBLite consensus disorder prediction 118 141 - -
Rops10g01803 446 SUPERFAMILY DNA-binding domain 258 316 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01803 Rops-Chr10 33561125 33574921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01803 90 446 AP2-EREBP Transcription Factor Family AT1G78080 52.703 1.27e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops10g01803 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01803 K09286 - gmx:100800478 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01803 10 33561125 33574921 Rops10g01803 10 33561125 33574921 ECH
Rops9g01521 9 25660944 25661951 Rops10g01803 10 33561125 33574921 PCT