Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01801 ATGACAAAGCAGAATGTGGTGACTCCTGAAGTCAAGTCATGTATTAACACGCTTATTGCCGTGGCAGCATCCATTTCAAATTCTGCTGTGTTACCAAGTGCAGCAGTGCCTGAATCCCTGGCTGTGCTTGGTGGGATTTTGGGCCTGCCACATGAAAATCTTGTGAAAAGGTTGGAAGGAGCTACTAGAGTTAGCACCTGGATTGATTCAATGAGAGCTTCTTCTCCTACTCGTGTCAAATCTTCTTTACCCTCTTCAGGAAACCAAGAAAAAAGTTCTTGGATTCTTTGTCATCCTTCAGCTCTGAACATGGTTGATCAGATAATATATAACTCTAAAGGAAAGCAGATTGTAGTTTTTCTTGACTATGATGGAACTCTCTCCCCGATTGTTGCAGATCCAGATAAAGCTTTCATGACTAGAAAGATGAGAGCAACGCTAAAGGATATAGCAAGACATTTTCCCACAGCCATAGTGACCGGAAGGTGCAGAGACAAGGTATTTAACTTTGTAAAATTGGCAGAACTGTATTATGCAGGAAGCCATGGCATGGACATCAAGGGGCCAACAAAAAGCCCAACTCCAGAGAAAGGTAATAATAAAGCAGTGCTGTTCCAACCTGCGAGTCAATTCCTGCCCATGATCGATGAGGTGTACAACATCTTGTTAGAAAAAACAAAGTCTGTCGCAGGGGCTAAGGTAGAGAACAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCACCGTTGGCTGAGAAAGTTAGATTGGTGCTCAATGAGTATCCACAACTTAAGCTAACCCAAGGTAGAAAAGTGCTAGAGATCCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCGTTAGGATACGAGAATTCTAATGACGTATTCCCAATCTATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGCGCAGAAGGGATCAAGGGATTGGAATTCTTGTTTCTAGATTTCCAAAAGAAACAGACGCTTCCTACACCTTGCAAGATCCATCAGAGGTTGAGCAATTTTTGCGGCGTTTGGTGGAGTGGAAAAGATCGAGTAGCGTGAATACCGCAAGTGTATAG 1134 0.4295 MTKQNVVTPEVKSCINTLIAVAASISNSAVLPSAAVPESLAVLGGILGLPHENLVKRLEGATRVSTWIDSMRASSPTRVKSSLPSSGNQEKSSWILCHPSALNMVDQIIYNSKGKQIVVFLDYDGTLSPIVADPDKAFMTRKMRATLKDIARHFPTAIVTGRCRDKVFNFVKLAELYYAGSHGMDIKGPTKSPTPEKGNNKAVLFQPASQFLPMIDEVYNILLEKTKSVAGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLNEYPQLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRRRDQGIGILVSRFPKETDASYTLQDPSEVEQFLRRLVEWKRSSSVNTASV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01801 377 CDD HAD_TPP 118 356 - -
Rops10g01801 377 NCBIfam HAD-IIB family hydrolase 119 327 IPR006379 -
Rops10g01801 377 FunFam Trehalose 6-phosphate phosphatase 117 204 - -
Rops10g01801 377 Gene3D - 117 214 IPR023214 -
Rops10g01801 377 Gene3D - 217 375 IPR023214 -
Rops10g01801 377 SUPERFAMILY HAD-like 118 366 IPR036412 -
Rops10g01801 377 NCBIfam trehalose-phosphatase 115 364 IPR003337 GO:0003824|GO:0005992
Rops10g01801 377 FunFam Trehalose 6-phosphate phosphatase 214 373 - -
Rops10g01801 377 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 60 372 IPR044651 GO:0004805|GO:0005992
Rops10g01801 377 Pfam Trehalose-phosphatase 120 354 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01801 Rops-Chr10 33515974 33518787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01801 113 363 Trehalose Biosynthesis Gene Families AT1G70290 26.022 4.14e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01801 K01087 - gmx:100815979 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01801 10 33515974 33518787 Rops10g01801 10 33515974 33518787 ECH
Rops9g01518 9 25603083 25605580 Rops10g01801 10 33515974 33518787 PCT