Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01788 ATGGGCAGGTCCTCATGCTGCGATGAGAATGGCCTTAAGAAAGGACCCTGGACTCCTGAAGAAGATCAAAAGTTAGTTGAGCACATTCAGAAACATGGCCATGGTAGTTGGAGAGCACTCCCTAAGCAGGCCGGCCTTAACAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAACTATTTAAGGCCTGACATCAAGAGGGGGAAATTTTCTCAAGAGGAGGAACAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACTCATCTTCCTGGCAGGACAGATAATGAGATCAAGAATTTCTGGAATACTCATCTGAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAACCTAGAACGGACCTTGTTTCTACCTTGCCATATCTACTAGTTTTGGCCAACATGACAGACCTTATGGGTCATCATCAGTCATTGGATGAACAGGCTGTGAGGTTACAAAGTGAGGCAGTTCAGCTGGCAAAGCTTCAATACCTTCATTATTTACTCCAATCTCCAAATTCCTTAAGTATTACCAACTCCTATGACCAAAATGCCATCACAAACTTAATCTCTAATGTTAAAGAGAACACAGTTATAGACTACTCACAACTGGATACTCCAGCCTCATTTTCTCATGGGATTGCTAGCTCCCAACCACTCCACCACCCAAGCATGTTACCTCACTTTTTAGACCCACAAGTCTCTTTCAGTTCCCAGTCATGTTTGAATAATGAGCAGGGTCAAGATACAAACTTTGCAATGATAAGTCAAGGGGATCACACGGCTGATGACTCATCCTGGGTTATTCCATCTCTTGCTCCATCTATTCCTCCAAATGTGATAGGGACCTCAGCTAGCAATCCAGGAGATGCCAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCTCATCTTATTGGTCTGAACTATTCTTTGAGGACCCCATCATGCATGAACTATCTTAG 993 0.4381 MGRSSCCDENGLKKGPWTPEEDQKLVEHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLVLANMTDLMGHHQSLDEQAVRLQSEAVQLAKLQYLHYLLQSPNSLSITNSYDQNAITNLISNVKENTVIDYSQLDTPASFSHGIASSQPLHHPSMLPHFLDPQVSFSSQSCLNNEQGQDTNFAMISQGDHTADDSSWVIPSLAPSIPPNVIGTSASNPGDASSSTSSYGGGPSSYWSELFFEDPIMHELS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01788 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops10g01788 330 CDD SANT 69 112 IPR001005 -
Rops10g01788 330 CDD SANT 16 61 IPR001005 -
Rops10g01788 330 Gene3D - 69 116 - -
Rops10g01788 330 FunFam Transcription factor MYB39 69 130 - -
Rops10g01788 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops10g01788 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops10g01788 330 FunFam MYB-related transcription factor 13 66 - -
Rops10g01788 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Rops10g01788 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops10g01788 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops10g01788 330 SMART sant 13 63 IPR001005 -
Rops10g01788 330 SMART sant 66 114 IPR001005 -
Rops10g01788 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops10g01788 330 Gene3D - 13 66 - -
Rops10g01788 330 MobiDBLite consensus disorder prediction 289 309 - -
Rops10g01788 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01788 Rops-Chr10 33263274 33264942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01788 1 330 MYB Transcription Factor Family AT1G34670 53.067 1.56e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g01788 Myb_DNA-binding 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01788 K09422 - gmx:100782792 567