Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01777 ATGAGTGAAACCGCGAGTCTTCATGCACAAACAAGGACACCCTTTTCTTCTTTTGATGCCATGGCTTATCCAAATTATCGATCACAGTTTGGAGACACAACGTTCACAAAATTGTTTGTTGGAGGATTAGCATGGGAGACTCCAACTGAAGAAATGCGCAAATATTTTGAGCAGTTCGGGGACATTCTTGAAGCTGTCATAATCACTGACAAAAACACAGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCAAGAATCAGCAAGAAGGGCTTGTGCTGATCCAAATCCAGTAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTTTTGGAAGGACTCGACCATCACCACCTCGAGGAAGGAATATAGCTCAAGGTGGAGGAGGAACAGCACAAGGTGGAGCATCATATAGTGGTATTCCGGCAGCAGGACCACCATCACTGCCACCACCAGCTACTCTAATGTATCCACCACCATATGGCTACACAACCTACACTCCTGATTATGGGTACCACCAAGCCACATTGTACAATCCACAGATTCAGCAACCACAATACTATCAACAACTTTATGGACCATCTTCTTCCACCATGGGCTCCCCGTATTACTATGGTTATTCTGTGCAAGCACCAAGAAGTACATTTTCTTCTCCTCAAGCAAATCGCCTATCAGCTGGACCATCTTATCTTTACTACCCTTCAACCATGGATGTTTCTTTCTCTGGATATCGTTCACCCCAACAACCAACAATAAGGAAACCCTTTCCTTCTCCTAGTGATTCACAGACTCAGCAGCGTGAGACAGCAGCTGGAGTAGTTATAACTTCAGAAAGCTCAAACACCCAAGTGAAGAACTAA 867 0.4383 MSETASLHAQTRTPFSSFDAMAYPNYRSQFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPVIDGRRANCNIASFGRTRPSPPRGRNIAQGGGGTAQGGASYSGIPAAGPPSLPPPATLMYPPPYGYTTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRSTFSSPQANRLSAGPSYLYYPSTMDVSFSGYRSPQQPTIRKPFPSPSDSQTQQRETAAGVVITSESSNTQVKN* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01777 288 SMART rrm1_1 37 109 IPR000504 GO:0003723
Rops10g01777 288 Gene3D - 8 135 IPR012677 -
Rops10g01777 288 SUPERFAMILY RNA-binding domain, RBD 23 137 IPR035979 GO:0003676
Rops10g01777 288 FunFam RNA-binding protein 24-B isoform X1 23 132 - -
Rops10g01777 288 PANTHER BOULE-RELATED 15 266 - -
Rops10g01777 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
Rops10g01777 288 MobiDBLite consensus disorder prediction 111 139 - -
Rops10g01777 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 95 IPR000504 GO:0003723
Rops10g01777 288 CDD RRM_RBM24_RBM38_like 36 111 - -
Rops10g01777 288 MobiDBLite consensus disorder prediction 244 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01777 Rops-Chr10 33076466 33079867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01777 32 112 C2H2 Transcription Factor Family AT2G19380 39.506 3.92e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01777 K25006 - gmx:100811977 426.017