Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01772 ATGGAGTCTCAGAGAGATCGAAGGAGAGATGCTCTTGGAGATCTTCAAGTCCTTCACGATGAAATCCTCTGTGCAATTCTGGAACGACTCACTCCCCAAGATGTTGCTCGCCTCGCTTGCGTCAGCAGTGTGATGTACATACTATGCAATGAAGAACCACTGTGGATGACTCTGTGCCTAAAAGGAGCATCTGGTTTACTTCAATACAAAGGCTCTTGGAAGAAAACTGCGCTGCTTAATGAGAATCTGCCAGACAAGTACAAAGAGTGCAATCAACCACCTTTAAATTTTGATGGGTTCTACTCTTTATTTTTGTACAGGAGATTATATCGGTGTCATACCACATTGGATGCATTTTATGCAGATAGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTGTAATGAGTATGATGCAAAGAAACCGGTTATGCTTAATGGATTGGCAGACACATGGCCTGCCAGGCATAAATGGACAATTGATCAGCTGCTGCTAAACTATGGAGATTTAGCATTTAAAATTTCTCAAAGGAGTTCCCGGAAGAACTCCATGAAGTTCAAGGATTATGTCTCATACATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTCGGCGAAGTTGCACCTAGCTTATTGAAGGATTATAGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATATGGATAAACGACCATCCTATAGGTGGCTCATAATTGGACCAGAAAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCCTTGGGTGTGACGGTGCATGTTAATGAAGATGATGGTGACGTCAATGTTGAGACTCCAACATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATCGAGTGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTCTAAATTTGGAGACAACTATTGCTGTCACACAGAATTTTGTGAATTCCAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTCTGCCGTGCTGGATTGCTTGCTCTTGACGAAGATGGTTATGAAAATGTCATACAGAACATTTCATGTAATGAAACAAATAAATGTTACCCTGATATGCCAAGAAAGGAGAAAAGAGCCAAAACTCAGAAAGAGGTAGATGATCTAGCCATAAATGGAGTATCTAGAAGCTATAATTTATGGAAAGATGGATTTTCCTATGATATAAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCCCTCTGGAGCTCAGGCAACAGTATTGGTCAACGAGAACTGAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCTAAAATGAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCTGACAAGTGGTTAGGATGCCTATCAAAAATTTGTGCCTTTCACAATTTGCCCTCTCCTACTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAACCCTGTTTATCTAGTGGGAAACTCTGTTGTTAAAATTTTTGCTGAAGGAGGACTGGAAGCTTCACTTTATTGTTTAGGCACAGAGCTAGAGTTTTACAGTCTGCTGCATGAAGCCAACTCCCCTCTCAGCAAACATATTCCTAATGTTTTGGCCAGTGGGATTGTTTATCTTGAAGATGGATCTTATACCAATTTGAGTTGGGATGGAAAAGGAATACCTGGTGTCATTGCAGAAAGCACTCTTATCAAGAAGAAATGCGACGTTGATGGTTTCTCATTTGGGGTATGGGGCAAGAAACAGTTCGAGTATAGGAATGCTGGGATGCCGGTGGACGGATCAGTTAGTCTACCTGGTCACTCAAGCATATGGCCATATATGATAACAAAACGATGTGAAGGAAAGATATTTGCAGAGTTAAGAGACAGATTATCATGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGGGAGCAGCTGCGCCACCTTCATCTTTTGCCGCATCCACCTTTAAATATTTCATCTTTCACTGATATTGAACATGAATTAAGCTTGTCTGAGGCTAATGGCTGTTTTACAACTGTTAATTGTAAATCAAACTCTACAGCAGAATGGGAAATCTTCACCAGAACCTTAATAAAGAAGAGGAAGGATGTCTCGAGCCGTTTGACCAAGTGGGGAGATCCCATTCCTAGCAAACTTATAGAGAAAGTTGATGAATATATCCCACTCGATTTTGCTAAGTTGCTAAATATAACTGAGAATTTTGCAAGCGGTACTTGTAAACCTTGCTCCTGGACACACACTGACATTATGGATGATAACATTTACATGGAACCCTCAATTGTTTGCCCTGCCTCCAACGGGAATACTGAAGATGCTCTGGTGGACAATGGTTTGTTGAGGGACTATGATGAAGTGAAATCCTGGTCTCCTAGTCACATCCTTGATTTCAGTGATCTTTCTATGGGTGATCCTATTTTTGACTTGATACCAATATATTTAGATGTGTTTAGAGGTGATACGGATCTCCTTAAGCGATTTTTAGAAAGCTACAAACTTCCTTTCGTTAGTAACATATCAAAGTATGAGCCAACAGAGGGTGTTCAAAAGTTTGGCCGACTTTCATATGTTGCCATGTGCTATTGTATTTTGCATGATGACAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCAGCAAAGTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTGAACAATTACAAAGGCTTTCCTAGAACGGACACCAGAGCCCCGGTGATAATACATGTTTGCTTGTCCAGTAGTTAA 2946 0.4087 MESQRDRRRDALGDLQVLHDEILCAILERLTPQDVARLACVSSVMYILCNEEPLWMTLCLKGASGLLQYKGSWKKTALLNENLPDKYKECNQPPLNFDGFYSLFLYRRLYRCHTTLDAFYADSGNVERIKDISLKDFCNEYDAKKPVMLNGLADTWPARHKWTIDQLLLNYGDLAFKISQRSSRKNSMKFKDYVSYMKVQHDEDPLYIFDEKFGEVAPSLLKDYSVPHLFQEDFFDILDMDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNVETPTSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRAGLLALDEDGYENVIQNISCNETNKCYPDMPRKEKRAKTQKEVDDLAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKMRELIWKGACIALNADKWLGCLSKICAFHNLPSPTDDERLPVGTGSNPVYLVGNSVVKIFAEGGLEASLYCLGTELEFYSLLHEANSPLSKHIPNVLASGIVYLEDGSYTNLSWDGKGIPGVIAESTLIKKKCDVDGFSFGVWGKKQFEYRNAGMPVDGSVSLPGHSSIWPYMITKRCEGKIFAELRDRLSWEDTTNLASFLGEQLRHLHLLPHPPLNISSFTDIEHELSLSEANGCFTTVNCKSNSTAEWEIFTRTLIKKRKDVSSRLTKWGDPIPSKLIEKVDEYIPLDFAKLLNITENFASGTCKPCSWTHTDIMDDNIYMEPSIVCPASNGNTEDALVDNGLLRDYDEVKSWSPSHILDFSDLSMGDPIFDLIPIYLDVFRGDTDLLKRFLESYKLPFVSNISKYEPTEGVQKFGRLSYVAMCYCILHDDNVLGAIFSIWEELRSAKSWEEVELTVWGELNNYKGFPRTDTRAPVIIHVCLSSS* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01772 981 Gene3D Cupin 110 363 - -
Rops10g01772 981 SMART cupin_9 206 373 IPR003347 -
Rops10g01772 981 FunFam F-box protein At1g78280 106 363 - -
Rops10g01772 981 Pfam Cupin-like domain 143 365 IPR041667 -
Rops10g01772 981 SUPERFAMILY Protein kinase-like (PK-like) 663 914 IPR011009 -
Rops10g01772 981 SUPERFAMILY F-box domain 5 64 IPR036047 GO:0005515
Rops10g01772 981 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 581 - -
Rops10g01772 981 Pfam F-box-like 20 61 IPR001810 GO:0005515
Rops10g01772 981 SUPERFAMILY Clavaminate synthase-like 118 370 - -
Rops10g01772 981 Gene3D - 3 89 - -
Rops10g01772 981 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01772 Rops-Chr10 32974442 32983448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01772 4 960 Glycosyltransferase AT1G78280 61.602 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops10g01772 Cupin_8 1.4e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01772 - - gmx:100792541 1734.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01772 10 32974442 32983448 Rops10g01772 10 32974442 32983448 ECH