Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01767 ATGCATGCCACAGTAAAAAAGACTCTGGTTTACAAGTTCAAGGCATTACTTGAAGAAGGAAAGGTCTATGTGATGGCTTATTTTGGTGTAGGTGGAAATGCTGGATTTTTTCGCACAACTAAGCATGAGTATCGACTTCATTTTCAATTTAGAACAACGGTTAAGGCTTCTGAAAGTAATTTAATTCCAATTTATGGATTTAAATTTGTTCTATTCAATGAGATTTTTCAAACTTCTGTTGATTATCCTCATTTAGTTGGGGAATTTGTGGAGCAACTTAATTGTTTTCTTGCTAATTCTGATACCAATCAAAATATTGTTGTGGTCCAGTTTGCTAAAATTAAGAGTTTTAAAGGGAAGATTGTGCTGCAAAACGTGATGTTTGGCACAAGGTTGTTGTTCAACCCAGACATTCCAGAGGTTTTAGAACTAAAAAACAGGCTGCCGGTTCCAAATTCTGAGTCCTCTCAAGGCTTGAGTGTAATATCTGAAACTCCACGATTTTCTATGGAGGAGGATTTCCTGAAAGCAACTCCAAACAAATCTATAGAAGAATTAAAGGATTGCAAGGATTCTGGATTTTATGCTGTTTTGGCTACTATCAACTGTGTTACCAATGGTCCGGATTGGTGGTATACAGCTTGCAAGTGCAACAAAGCTGTCCATCCTGATTCTGGGATGTATTATTGTGAAAGGTGTTACTGTCACGTCGTTCATGTAACACCAAGGTATCGACTTAAGCTTAGAGTTGTGGATGACACAGATAGTGCAACATTTATTCTGTGGGATAGGGATGGCACTATGCTACTTAACAAGTCATGCTCCCAGTTGCTTGAATCTGTTAAGAAGGGGGAAGGTCCAATTACTCATCCTTCTGAATTTGATGAGTACCTTATTGGGAAGGAATTATTATTCAAGGTTGAAGTAAAGTCAGTGATCAGTTCAGAATTTGAACCTTCATATAAGGTTGTCAGACCTGATAGGACTGTGGGTATCTCTTATGGAGATACCTCTTTAAGTGCTGATTTGCAACATCTGCAGTCTCCTTGCAGCAAGCCTGATATGACTGTAGGTATCTCTTATGGAGATACCTCATTAAGTCCTGATTTCCAAAATCTGCGGTCTACTGGCAACAAGGATGTCTTCGAAATGTCATCTGAACAAGAAATTTACCTTAGTTCTCAAGCTGACAACTCAGAACCTCTATTGACTCCTAACAAAAGGCCTCTTGAAGTGTTTGATGAAATTGCTGATGGTGACATGTCTTCAACCAAATTGAAAGAAATTAAAAAGAAACCTGAAGATTGA 1308 0.3815 MHATVKKTLVYKFKALLEEGKVYVMAYFGVGGNAGFFRTTKHEYRLHFQFRTTVKASESNLIPIYGFKFVLFNEIFQTSVDYPHLVGEFVEQLNCFLANSDTNQNIVVVQFAKIKSFKGKIVLQNVMFGTRLLFNPDIPEVLELKNRLPVPNSESSQGLSVISETPRFSMEEDFLKATPNKSIEELKDCKDSGFYAVLATINCVTNGPDWWYTACKCNKAVHPDSGMYYCERCYCHVVHVTPRYRLKLRVVDDTDSATFILWDRDGTMLLNKSCSQLLESVKKGEGPITHPSEFDEYLIGKELLFKVEVKSVISSEFEPSYKVVRPDRTVGISYGDTSLSADLQHLQSPCSKPDMTVGISYGDTSLSPDFQNLRSTGNKDVFEMSSEQEIYLSSQADNSEPLLTPNKRPLEVFDEIADGDMSSTKLKEIKKKPED* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01767 435 CDD RPA1_DBD_C 181 325 IPR047192 -
Rops10g01767 435 Gene3D - 84 156 IPR012340 -
Rops10g01767 435 SUPERFAMILY Nucleic acid-binding proteins 88 150 IPR012340 -
Rops10g01767 435 Gene3D - 171 330 IPR012340 -
Rops10g01767 435 CDD RPA1_DBD_B_like 85 149 - -
Rops10g01767 435 Pfam Replication factor-A C terminal domain 194 311 IPR013955 -
Rops10g01767 435 Gene3D - 1 59 IPR012340 -
Rops10g01767 435 Pfam Domain of unknown function DUF223 1 81 IPR003871 -
Rops10g01767 435 SUPERFAMILY Nucleic acid-binding proteins 1 58 IPR012340 -
Rops10g01767 435 CDD RPA1_DBD_A_like 1 54 - -
Rops10g01767 435 SUPERFAMILY Nucleic acid-binding proteins 181 319 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01767 Rops-Chr10 32935426 32937739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01767 1 254 Core DNA Replication Machinery Family AT5G08020 23.548 5.36e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01767 - - vun:114187234 277.33