Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01753 ATGGCGCTGCTACGTCTTATGTGCTTAACTTCAGCAACAACTCACTTACCCACACAACACCATGTAACCTCTTTCTCATCCCAATCTCTATCTTATCATTCCACCAATGTCTCTTTTTGTCAGCCACCCTCTTCGTTTCACCTTCCCTGTCTATCCCTAGCGCATACCCCAACCCTTATCAGAACCAAAGAAGCCCCTAACTTTACTGTCAAAGTCTCCTCTACTTCCCAAGAACAAACCCAAGAAACCGATGCAGCAACTGAAGAATTTTCCCGTACCAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGTACCCCTGAAGATATTCGTTCTTTGTTCGAGAAACATGGAAAAGTCGTCGATGTTGAGCTATCTATGTATAACAAGACCAGAAACAGGGGTTTGGCGTTTGTCGAAATGGGTTCCCCAGAAGAGGCTCTTGCGGCTTTCAATAGTCTCGAATCGTATGACTATGAGGGTCGCAAAATAAAACTCACCTATGCTCGGCCAAAAAAGAAGAAAACTCCACCGCCCCCAGTGCAACCTAAGCCAGTAACATTTAATTTGTTTGTTGCAAACTTTTCCTACGAAGCTAGGGCAAAGGATCTTAGGGAGTTTTTTGATTCAGGAAGTGGTAGAGTTGTTTCTGCAGAGGTCATATTTCATGATACCCCTAGAAAGTCATCTGGTTATGGATTTGTGTCCTTCAAGACGAAGAAAGAAGCTAATGAAGCTCTTTCTGAGTTCCAGGGAAAGATTTTTATGGGAAGGCCACTCAGGGTGGCACCCAGTAGGCGATTTGTTCGACTGCAAGTAGAGGAGAGTGCAAAGTCTGAAGATACCTCTTCTGAGTTGAGTGTGAATGGGGCAGAAGCTGACAAAGCTGATTGA 891 0.4501 MALLRLMCLTSATTHLPTQHHVTSFSSQSLSYHSTNVSFCQPPSSFHLPCLSLAHTPTLIRTKEAPNFTVKVSSTSQEQTQETDAATEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVVDVELSMYNKTRNRGLAFVEMGSPEEALAAFNSLESYDYEGRKIKLTYARPKKKKTPPPPVQPKPVTFNLFVANFSYEARAKDLREFFDSGSGRVVSAEVIFHDTPRKSSGYGFVSFKTKKEANEALSEFQGKIFMGRPLRVAPSRRFVRLQVEESAKSEDTSSELSVNGAEADKAD* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01753 296 Gene3D - 175 271 IPR012677 -
Rops10g01753 296 SMART rrm1_1 188 262 IPR000504 GO:0003723
Rops10g01753 296 SMART rrm1_1 94 166 IPR000504 GO:0003723
Rops10g01753 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 260 IPR000504 GO:0003723
Rops10g01753 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 164 IPR000504 GO:0003723
Rops10g01753 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Rops10g01753 296 SUPERFAMILY RNA-binding domain, RBD 93 262 IPR035979 GO:0003676
Rops10g01753 296 MobiDBLite consensus disorder prediction 273 296 - -
Rops10g01753 296 CDD RRM_SF 99 165 - -
Rops10g01753 296 Gene3D - 61 174 IPR012677 -
Rops10g01753 296 PANTHER OS02G0815200 PROTEIN 17 263 - -
Rops10g01753 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01753 Rops-Chr10 32762734 32764742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01753 81 288 Eukaryotic Initiation Factors Gene Family AT2G36660 28.251 1.96e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01753 - - gmx:100790439 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01753 10 32762734 32764742 Rops10g01753 10 32762734 32764742 ECH