Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01751 ATGGCACTGGAGGCTGTGGTTTTCCCACAAGATCCATTCACATATGGTTGCAAGGACTACTTATACTCCTTAGTTGGAGGAGGAGCTACAAGTGGTGGTGGAGCCTGGAGCCACCAGTATGGTTTCCAAGCAGCAGAAGAAGAGAAATTCCTCCTTGGAATTATCAACAATAACAACATAGAACAGAATCTCCATACAAATTGGGATTCTTCTTCTACCTCGGTGTTGCAAAATGTCAAAGAACAATGGGATTCTCACTCTTCCTCCCCAGAAGCCTGCACCGTTGATCAATCTCTGACCACACCTTTCCCTCCTCCTCCTCCTCCTCCTCCCTCCGTGGAAGCTACAGCAACTACCATAGGTAGTAGGCGTAAACGACGTCGTACTAAGAGCACAAAGAACAAGGAGGAAATTGAGAACCAGAGGATAACACACATTACGGTTGAGCGCAATCGTAGAAAACAGATGAATGAGTACCTGGCTGTGCTTCGATCATTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGCGCTATAAACTTTGTGAAGGAGTTAGAGCAACTTTTACAGTCCATGGAGGGTCAAAAGAAAACGAACCAACCACAAGAGAATATTGGCTTAAATGGCTCCCCACCCTTTGCTGAATTCTTCACGTTTCCTCAATACACTACACGTGCAACTCAGAGCAACACAGCGACGACGATGATGGCACAGAACGATGAAGGGAAACAGTGGGCTGTAGCAGACATTGAAGTGACCATGGTGGATAACCATGCCAACTTAAAGATACTCTCAAAGAAACGACATGGGCAGCTTATGAAAATCGTTGTTGGGCTTCAAAGTCTTTGGCTTACCATTCTCCACCTTAACGTTACCACTCTTGAAGATATGGTCCTTTACTCAGTTAGTCTTAAGGTAGAGGACGGGTGTCAGCTGAACACGGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTACGCACACTTCAAGAAGAAGTGGCTTTCAACTAA 1029 0.4529 MALEAVVFPQDPFTYGCKDYLYSLVGGGATSGGGAWSHQYGFQAAEEEKFLLGIINNNNIEQNLHTNWDSSSTSVLQNVKEQWDSHSSSPEACTVDQSLTTPFPPPPPPPPSVEATATTIGSRRKRRRTKSTKNKEEIENQRITHITVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKTNQPQENIGLNGSPPFAEFFTFPQYTTRATQSNTATTMMAQNDEGKQWAVADIEVTMVDNHANLKILSKKRHGQLMKIVVGLQSLWLTILHLNVTTLEDMVLYSVSLKVEDGCQLNTVDEIAAAVNQLLRTLQEEVAFN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01751 342 PANTHER MAX DIMERIZATION, MAD 80 338 - -
Rops10g01751 342 MobiDBLite consensus disorder prediction 83 99 - -
Rops10g01751 342 Gene3D - 129 208 IPR036638 GO:0046983
Rops10g01751 342 SMART finulus 146 197 IPR011598 GO:0046983
Rops10g01751 342 CDD bHLH_AtFAMA_like 143 206 - -
Rops10g01751 342 Pfam Helix-loop-helix DNA-binding domain 141 192 IPR011598 GO:0046983
Rops10g01751 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 191 IPR011598 GO:0046983
Rops10g01751 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 207 IPR036638 GO:0046983
Rops10g01751 342 MobiDBLite consensus disorder prediction 100 114 - -
Rops10g01751 342 MobiDBLite consensus disorder prediction 83 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01751 Rops-Chr10 32750691 32752494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01751 1 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.289 1.62e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g01751 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01751 - - gmx:100789380 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01751 10 32750691 32752494 Rops10g01751 10 32750691 32752494 ECH
Rops9g01463 9 24334764 24336161 Rops10g01751 10 32750691 32752494 PCT