Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01750 ATGAGTCCCACTCTCACATACTGGACTTTCCATCATGGCCTTCTTCTTCTTGTTCTTCTTATCTTACAGGCTCTGCCGCCGGCAACCGCACAGCTCCCTAACACGTTGCCGCCTCCACCGCCGGACAGAATTTCCAAGCTCAAGTTCGATAAATCCATGGCCATAGTCCTTGTGATCTTGGTCGTTGTGTTCTTCGTCTTGGGCTTCATCTCGGTATACACTCGCCGGTGTGCGGAGCGAGGGATGATAGGGAGGCTCGACTTCTCCATCCCCATCGTCGGCAGCCACCGGAGAAACCGCGGTCTCGACCCAGAGATCATCGAAACCTTCCCCACCTTCGTCTACTCCACCGTGAAGAGCCTCAAGATTGGAAGGGCCACGCTAGAATGCGCGGTGTGCCTAAACGAGTTCGAAGACAACGAAACGCTGCGTTTGATCCCCAAGTGTAGCCACGTGTTCCATCCCGAATGTATCGATGCTTGGTTGGCCAACCACTCCACGTGTCCCGTTTGTCGGGCCAACCTAATTCCAAGTCCGGGAGACACTTCCTTCTTAGCGATTCAAATTCCAGATTCTTCCATTCATGATTCAAATGAACAGAGACAGACCCCACCCAACACTCAAATCGATCACCAAAACAGCCCAGCTCATGTTTCTCCTAAGATAAATTATTCAGTTACACCTAACCGTCCACCTCGATCAAGGTCAACGGGGTTTAGGTTCACGAATTGGTTTCCACGGTCTCATTCAACGGGTCACTCGTTGGTTAAACAGGGTGAGAATTATGATAGATTCACTCTGAGGTTGCCAGAGGAGATAAGAAACCAGCTGGTGAACTCCACGTTGAGCCGCACGAAGAGCTGCGGCGTCACCTTTACGCGAGAGGGCAGTCCGAGGAGGAATTACAGGACCAGAAGTGTTGCCCGGCCGGACCGGCGAGGGTTCTCTTGTACACCACCGTTTATGAATAGGGCTGATACGACCAGGTCAACTAAGGCTTCTTCTACTGATGACTTGGGAGAACGATCTTCAGATCGGTTATTCGCAGGTTGTGAGGAGTTAGGTCAGGTTAGGCAGACTGGATAA 1086 0.5166 MSPTLTYWTFHHGLLLLVLLILQALPPATAQLPNTLPPPPPDRISKLKFDKSMAIVLVILVVVFFVLGFISVYTRRCAERGMIGRLDFSIPIVGSHRRNRGLDPEIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEDNETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLIPSPGDTSFLAIQIPDSSIHDSNEQRQTPPNTQIDHQNSPAHVSPKINYSVTPNRPPRSRSTGFRFTNWFPRSHSTGHSLVKQGENYDRFTLRLPEEIRNQLVNSTLSRTKSCGVTFTREGSPRRNYRTRSVARPDRRGFSCTPPFMNRADTTRSTKASSTDDLGERSSDRLFAGCEELGQVRQTG* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01750 361 SUPERFAMILY RING/U-box 124 180 - -
Rops10g01750 361 Pfam Ring finger domain 129 172 IPR001841 -
Rops10g01750 361 MobiDBLite consensus disorder prediction 291 361 - -
Rops10g01750 361 CDD RING-H2_EL5-like 129 172 - -
Rops10g01750 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Rops10g01750 361 FunFam E3 ubiquitin-protein ligase ATL6 92 178 - -
Rops10g01750 361 MobiDBLite consensus disorder prediction 193 239 - -
Rops10g01750 361 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Rops10g01750 361 SMART ring_2 130 171 IPR001841 -
Rops10g01750 361 PANTHER RING FINGER DOMAIN-CONTAINING 40 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01750 Rops-Chr10 32724659 32726060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01750 7 339 Rapid Response to Elicitors AT3G05200 38.372 5.52e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01750 K10664 - gmx:100805815 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01750 10 32724659 32726060 Rops10g01750 10 32724659 32726060 ECH