Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01734 ATGGCCGCCGTTAATCCACAGCCTCTGCAGTTCGTCGACCCTTCGATACCGGTCGACGACGACGACGACGATGACGATGACGACGGTGATGCCATGGATGAGTTGGAGGACGAAAATGTAAATTCAGTAACCGTTGCAGCGAGTTCGAATCATGAAGCGGTTGTTTTGCCTTCACGTACTAGTGAACTCACTCTTTCTTTTGAGGGTGAGGTTTATGTCTTTCCCGCTGTTACTCCTCAGAAGGTGCAAGCTGTTTTGCTGCTTCTGGGAGGACGTGATGTGCAGGCAGGCATGCCTACAGTTGAACTACCATTTGATCAAAGTAACAGGGGCATGGGTGACACTTCGAAGCGTTCAAATCTTTCACGAAGAATAGCCTCCTTGGTCAGGTTCCGTGAAAAACGCAAAGAAAGATGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAAAATGGGCAATTTGCATCTCTGAAGGAAAGCCCAGGTTCATCTAATTGGGACTCTGCACAGAGCTCTGGTCAAGATGGCACTCCTCAGTCTGAATCTGTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACTTTATGCAATGCATGTGGCCTTATGTGGGCTAACAAGGGTACACTCAGAGATCTTAGCAAGGGGGGAAGAAATCTTTCCATTGAGCAAAGTGATCCGGACATTCCTATTGATGTCAAGCCAACTGTTCTTGAAGGGGAATTGCCCATCCAAGATGAGCAAGGAATTTCTGAAGATCCTTCCAAGGCCATTGCTGCTAAATGCTCTAATAATCATGCTGTAAACCCCAGGGACGAGGAATTGCATGATTCTGTAGAACACTTTACAAACACTCTGCCACTTGAAATTGGGCATTCTTCGGCAAATGATGATGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTCGATTAG 1032 0.4651 MAAVNPQPLQFVDPSIPVDDDDDDDDDDGDAMDELEDENVNSVTVAASSNHEAVVLPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQAGMPTVELPFDQSNRGMGDTSKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQDGTPQSESVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSIEQSDPDIPIDVKPTVLEGELPIQDEQGISEDPSKAIAAKCSNNHAVNPRDEELHDSVEHFTNTLPLEIGHSSANDDEQEPLVELSNPSDTDIDIPGNFD* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01734 343 ProSiteProfiles GATA-type zinc finger domain profile. 189 247 IPR000679 GO:0006355|GO:0043565
Rops10g01734 343 Gene3D - 186 246 IPR013088 GO:0006355|GO:0008270
Rops10g01734 343 PANTHER GATA TRANSCRIPTION FACTOR 28 21 336 IPR045280 GO:0006355
Rops10g01734 343 ProSitePatterns GATA-type zinc finger domain. 195 222 IPR000679 GO:0006355|GO:0043565
Rops10g01734 343 Pfam GATA zinc finger 195 231 IPR000679 GO:0006355|GO:0043565
Rops10g01734 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 239 - -
Rops10g01734 343 MobiDBLite consensus disorder prediction 297 343 - -
Rops10g01734 343 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Rops10g01734 343 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515
Rops10g01734 343 MobiDBLite consensus disorder prediction 165 194 - -
Rops10g01734 343 MobiDBLite consensus disorder prediction 1 38 - -
Rops10g01734 343 Pfam CCT motif 124 165 IPR010402 GO:0005515
Rops10g01734 343 SMART tify_2 56 91 IPR010399 -
Rops10g01734 343 CDD ZnF_GATA 194 238 IPR000679 GO:0006355|GO:0043565
Rops10g01734 343 MobiDBLite consensus disorder prediction 16 37 - -
Rops10g01734 343 Pfam tify domain 58 90 IPR010399 -
Rops10g01734 343 SMART GATA_3 189 242 IPR000679 GO:0006355|GO:0043565
Rops10g01734 343 MobiDBLite consensus disorder prediction 157 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01734 Rops-Chr10 32400892 32407107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01734 21 237 Tify Gene Family AT1G51600 52.402 1.12e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops10g01734 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01734 - - gmx:100801328 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01734 10 32400892 32407107 Rops10g01734 10 32400892 32407107 ECH