Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01733 ATGTACGGCACTATGAACCAGATCGAAGACAACGATGACGGCGACCACCACATTCATTACGATTCCCCAGCCCTCGAAGACGGTGGCGTCACCGACCCTGACATGTCTCTCCAACGCTGCGATGATTCCAGCCAACTCACGCTTTCGTTTCGTGGCCAAGTTTATGTCTTCGATTCCGTTACCCCTGAAAAGGTTCAAGCGGTGTTGTTACTATTGGGAGGATGTGAATTATCTTCGGGTTCACAATGTGTGGAGATATCGCCTAATAATCAGAGGAGTGCAACGGAATTTCCTGCAAGGTGTAATCAGCCACAGCGAGTAGCGTCATTAATTAGGTTCCGTCAGAAGAGGAAAGAACGATGCTTTGATAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCAACGTAATAAGGGTCAATTTACATCGGCTAAGAAACAAGATGGAGCTAATAGCTGGGGTGCAGATCAAGAGTCGGTGCAGGATGCTGTTCAATCAGAAACCTCATGCACACATTGTGGAATAAGTTCAAAATCCACCCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGACACTTTGCAATGCTTGTGGGCTCTTTTGGGCAAATAGGGGTACTTTGAGGGATCTTTCCAAGAGAAACCAGGAACACTCAATTGCGCCAGCTGAGCAGGTTAATGAGGGTAATGACTTGAACAGTCGCACTGCTATCCCTGCACATAACGATCTTGTTAATGATAAAAAACCAGCTTTGGTATCTGATCGTTGA 780 0.4667 MYGTMNQIEDNDDGDHHIHYDSPALEDGGVTDPDMSLQRCDDSSQLTLSFRGQVYVFDSVTPEKVQAVLLLLGGCELSSGSQCVEISPNNQRSATEFPARCNQPQRVASLIRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKQDGANSWGADQESVQDAVQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKRNQEHSIAPAEQVNEGNDLNSRTAIPAHNDLVNDKKPALVSDR* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01733 259 MobiDBLite consensus disorder prediction 144 164 - -
Rops10g01733 259 MobiDBLite consensus disorder prediction 9 23 - -
Rops10g01733 259 MobiDBLite consensus disorder prediction 222 243 - -
Rops10g01733 259 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 222 - -
Rops10g01733 259 PANTHER GATA TRANSCRIPTION FACTOR 28 6 232 IPR045280 GO:0006355
Rops10g01733 259 MobiDBLite consensus disorder prediction 1 32 - -
Rops10g01733 259 SMART tify_2 39 74 IPR010399 -
Rops10g01733 259 MobiDBLite consensus disorder prediction 222 259 - -
Rops10g01733 259 Gene3D - 165 224 IPR013088 GO:0006355|GO:0008270
Rops10g01733 259 Pfam GATA zinc finger 174 210 IPR000679 GO:0006355|GO:0043565
Rops10g01733 259 Pfam CCT motif 106 148 IPR010402 GO:0005515
Rops10g01733 259 ProSiteProfiles CCT domain profile. 106 148 IPR010402 GO:0005515
Rops10g01733 259 SMART GATA_3 168 221 IPR000679 GO:0006355|GO:0043565
Rops10g01733 259 ProSitePatterns GATA-type zinc finger domain. 174 201 IPR000679 GO:0006355|GO:0043565
Rops10g01733 259 ProSiteProfiles GATA-type zinc finger domain profile. 168 226 IPR000679 GO:0006355|GO:0043565
Rops10g01733 259 ProSiteProfiles Tify domain profile. 39 74 IPR010399 -
Rops10g01733 259 CDD ZnF_GATA 173 219 IPR000679 GO:0006355|GO:0043565
Rops10g01733 259 Pfam tify domain 43 73 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01733 Rops-Chr10 32390061 32395553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01733 43 224 Tify Gene Family AT4G24470 66.848 1.64e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops10g01733 CCT 1.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01733 - - pvu:PHAVU_009G035400g 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01408 9 23149921 23155857 Rops10g01733 10 32390061 32395553 PCT