Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01722 ATGCCGGAGAAGAAGTCTAAGAAGGTTTTTTTCTCTGAGGAAGATGCTGCTACACTCACACACAGGTATGACGCAACTACGGTGTTAACGTTGCTTCAGGAAGTTGCGCACTATCCTCATTCGAAATTTGATTGGAATGAGTTGGTGAAGAAAACCTCCACTGGGATTTCTAATGCCAGAGAGTATCAAATGCTGTGGCGTCACTTGGCATACCATGATGCCTTACCTGAAAATTTTGAAGATGGAGCTGAACCTCTGGATGATGATAGTGACCTAGATTGTGAGCTGGAAGCCTTACCTCCTGTAAGTGCAGAATCTGCTTCGGAGGCTGCAGCATGTGTGAAGGTAATGATTGCTTCTCGTACGCTAAGTGAATCTACCCCTAGTAGCTCAACGATCGAGGCTCCGTTGACTATAAGTGTTCCAGTTGGCCTTTCATCTAGAACTTCTAATGGAAGTTCGCAGCCCTCTAATTTGATGCGAGCTACAAGCACTATTTTTCCAGTTACTGTTCAGAGACAAACATTGCCAACTATATCATCAACAGACGGTGTAGAAGCCAAGGGATTAGTTGGTGGTAACATGGCTTCCAAAAGAAAAAGAAAAGCATGGTCAGAGGAAGAGGACATGCAGCTACGAGCTGCTGTTCAGAGATGGGGTGAAGGGAATTGGGCGACAATGGCAAAAGGAGACAACTTTCCTATTAATAGAAGTGCTAATCAGTTGGCTCAGAGGTGGACCATTTTACGAAAGAAAGATGGCAGCGCCAATTCAGGAACCATCTCGACTACCACGCAGTATACTACAGCTGAACACCTGGCAACTCGTCACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCGGGAATGACTGAACCCGTTAGGACATCTATCTCTATTAAAAATCAAGTGCAGTCTTGCAATAGTATAGAAGCTTCAACAGTTCGCAGTAGTTCTGTACCACCTCAGCGTCCATCTCAGCAATCTTTGTTGGGATCTTGTGGTTCCCTGGCAAAATCCAAATTAGCTTCTGAAAGATCAGACTCAAAGTGTAATCCAGTTGCAGATCCTGAGTTAAAATCTACCACAGTTGATCCTGGGGCACGTGATTCACCGTCAAATAGTGCATCACAACTTAAGGTTGCTCAAGTAAGAAATATCGTAAATAATGTGCCTGCAGGTAGCTCTTTGACAAAGACATCTGTTTCCGCTGGTTTGCTTTCTGACCCAACAAAGGATAAGCACGTTACCTCTATGGTTAATGAAGCTTCAATAAATCAAGAAGTTCATCCCACAAAAAAATTTAGAGTTTCTGACTCTGGCTCCACACCAAATGAGAAGATACAAAAAGATGAAGGTCCTATATTTACTACTCAAAGTCAGACTGATAGCAATCTGGATAAGGGGAAATTAGATATAGATCAACACAAGAGCATACCTCTTGTAAAAGCTACAAGAAGTGAGGAAATTTCAGAACATAAAGCAGTCTCACAAACTACAGGAGGGTGTGAAGAGCAAGGAAGTGTTGAGAATTCAAATTCCAAGATGGAGACTACTGAAAATGAGAATAGCAACCTCGATAAGGAGACTAAAGATTTAGATCAAGACAAGAGGACAAATTCAATTAATGGAAGTTGCTACAATCAAAACATGAATGATAAACATGTAAATTTGCCAATACAGGGTGAATGCAGCCAAGGTTTGGAACTGTCAAGATAG 1734 0.4198 MPEKKSKKVFFSEEDAATLTHRYDATTVLTLLQEVAHYPHSKFDWNELVKKTSTGISNAREYQMLWRHLAYHDALPENFEDGAEPLDDDSDLDCELEALPPVSAESASEAAACVKVMIASRTLSESTPSSSTIEAPLTISVPVGLSSRTSNGSSQPSNLMRATSTIFPVTVQRQTLPTISSTDGVEAKGLVGGNMASKRKRKAWSEEEDMQLRAAVQRWGEGNWATMAKGDNFPINRSANQLAQRWTILRKKDGSANSGTISTTTQYTTAEHLATRHSLSLALDMPFKKLTAPGMTEPVRTSISIKNQVQSCNSIEASTVRSSSVPPQRPSQQSLLGSCGSLAKSKLASERSDSKCNPVADPELKSTTVDPGARDSPSNSASQLKVAQVRNIVNNVPAGSSLTKTSVSAGLLSDPTKDKHVTSMVNEASINQEVHPTKKFRVSDSGSTPNEKIQKDEGPIFTTQSQTDSNLDKGKLDIDQHKSIPLVKATRSEEISEHKAVSQTTGGCEEQGSVENSNSKMETTENENSNLDKETKDLDQDKRTNSINGSCYNQNMNDKHVNLPIQGECSQGLELSR* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01722 577 SMART sant 200 252 IPR001005 -
Rops10g01722 577 MobiDBLite consensus disorder prediction 371 385 - -
Rops10g01722 577 MobiDBLite consensus disorder prediction 544 558 - -
Rops10g01722 577 Coils Coil 514 541 - -
Rops10g01722 577 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
Rops10g01722 577 MobiDBLite consensus disorder prediction 440 558 - -
Rops10g01722 577 CDD SANT_TRF 202 251 - -
Rops10g01722 577 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 552 - -
Rops10g01722 577 MobiDBLite consensus disorder prediction 472 498 - -
Rops10g01722 577 MobiDBLite consensus disorder prediction 347 385 - -
Rops10g01722 577 MobiDBLite consensus disorder prediction 499 525 - -
Rops10g01722 577 Gene3D - 194 256 - -
Rops10g01722 577 MobiDBLite consensus disorder prediction 317 336 - -
Rops10g01722 577 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
Rops10g01722 577 MobiDBLite consensus disorder prediction 457 471 - -
Rops10g01722 577 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 254 IPR017930 -
Rops10g01722 577 MobiDBLite consensus disorder prediction 526 543 - -
Rops10g01722 577 SUPERFAMILY Homeodomain-like 199 252 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01722 Rops-Chr10 32179690 32186327 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g01722 Myb_DNA-binding 6.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01722 - - gmx:100799956 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01722 10 32179690 32186327 Rops10g01722 10 32179690 32186327 ECH
Rops9g01415 9 23275993 23280668 Rops10g01722 10 32179690 32186327 PCT