Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01712 ATGATGGTGTGCTCTTCGCATGACCTTGGACTTCAGTTCAATTCAACAATGGCATATTCGGGTTCAATACGATTGTCTCGCGATGTTAGACTATACAGTTGTAATGGAAGCTGTAGTTTTTGTCGTAAGCCCATGCATTGTTTTCTTACCATCAATCTTTTGCCACATGGTTTGAAACAGGATTCTTCAGCACACCTCTTTTCCAGATTACATGCACCATTTAAGCCTGTACCTTCTGGATGTAATGTTTTGTTGTGCCGGTCTGCCCTAATACCAGCTGGAGGGTGTGAGGCCCCACTTGTGAAATTGGCTACTGTTTCTTTGTCAAGGTCATATAATGCTATATCAGGAAGACCTATTGTGCTTCATTTGATCCCTGCCCTTGGCATCATTGGCTTTGCTGTCTTTGGTCTTGAGCCGCTCCTGCGCCTGAGCAGAGTTCTATTTCTCCAACAAAGGACTGATAAAAGTTGGAAGAAAAGTAGTTCACGGTATATTATGACATCTTATTTTCGACCTTTGCTGCTGTGGACTGGGGTAATGCTCATCTGCAGGGATGTAGATCCACTAGTCCTACAATCAGAAACCGGTCAGATTATGAAGCAACGGCTTCTGGGTTTTGTAAGATCTTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAATTCGACAAGCACAAAAATTCTGTATGGAGACAAATGACTCCAATGATGAAAGAAATATGAGCATTGATCTTGCTGGGAAAGCTGCATATAGTGCAATATGGGTTGCTGCTGCATCATTGTTCATGGAGTTGCTGGGTTTCTCCGCACAAAAGTGGTTGACTGCTGGTGGGTTGGGCACAGTATTGCTTTCCCTTGCAGGTCGAGAGATATTTACAAACTTCCTTTCAAGTGTAATGATTCATGCAACTCGACCATTTGATGTGAATGAGCGGATTCAAACAAAGATTAAAGGATACGAGGTTTCTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAAGAGTTAGAGGTGCTGATTGTGAGGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGTTGTGAGGAATCTTAGTAACAAATCTCATTGGCGCATCAAGACTTACCTTGCTATCAGTCACTTGGATTTTAACAAGATTAATAGTATTATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTGGAGCAGAGAAAATTGCACAGAAGGGTTTTTCTAGAGCATATCAATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACACTCTGAAGAGTACCTCCGTGTTAAGGAGGCAATCCTCTTGGATCTTCTTAGAGTCATCAGTCATCATCGAGCTCGGCTAGCCACACCCATCCGCACTTTTCAGAAGATGTATAGTGATGCTGATTTAGAAATCGATCCATTTGATGACACCATATTCACTCGTTCCAGGGCAAAGGCAAAACATCCATTCCCACTGATAGATCCACCTTACAAAGTTAAGCCTTCAACTCATTCAGCTACTGCAAGTGAGGACAAAGATGCCAAGATTGATGAACTTAAGTCAATATCTCAAGCCAAAACCCAGAATATGGGTTGTGATAATTCAGTCCAGAAGACCCCTAAATCCCTACAACAGCCCAAAAGGGAAAGAGCAGGAAGTGCAGAAAAGGGAACAACATTAACATCCAATGATTCTTTATCATCGGTTAGTCCTTCCTTGGAAGTGAATATTGTTCTTAATGCTGCCCTATTGGGCTCAAAGCGAACTCTTCCAATTGATGAAGAAATGGTTCCATCTATCCCTGAAGAATCACAAGAATTTGCTGTCCAACAGAATGGGAGTGATCCTCCTATTAGCAAGGATAAGGAGGATTGTTAG 1902 0.418 MMVCSSHDLGLQFNSTMAYSGSIRLSRDVRLYSCNGSCSFCRKPMHCFLTINLLPHGLKQDSSAHLFSRLHAPFKPVPSGCNVLLCRSALIPAGGCEAPLVKLATVSLSRSYNAISGRPIVLHLIPALGIIGFAVFGLEPLLRLSRVLFLQQRTDKSWKKSSSRYIMTSYFRPLLLWTGVMLICRDVDPLVLQSETGQIMKQRLLGFVRSLSTVLTFAYCSSSLIRQAQKFCMETNDSNDERNMSIDLAGKAAYSAIWVAAASLFMELLGFSAQKWLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFDVNERIQTKIKGYEVSGKVEHVGWWSPTRVRGADCEAVHIPNHKLSVNVVRNLSNKSHWRIKTYLAISHLDFNKINSIIADMRKVLAKNPQVEQRKLHRRVFLEHINPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHRARLATPIRTFQKMYSDADLEIDPFDDTIFTRSRAKAKHPFPLIDPPYKVKPSTHSATASEDKDAKIDELKSISQAKTQNMGCDNSVQKTPKSLQQPKRERAGSAEKGTTLTSNDSLSSVSPSLEVNIVLNAALLGSKRTLPIDEEMVPSIPEESQEFAVQQNGSDPPISKDKEDC* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01712 633 Gene3D - 309 362 IPR023408 -
Rops10g01712 633 MobiDBLite consensus disorder prediction 609 633 - -
Rops10g01712 633 Gene3D - 207 308 - -
Rops10g01712 633 MobiDBLite consensus disorder prediction 534 550 - -
Rops10g01712 633 Pfam Mechanosensitive ion channel 253 458 IPR006685 GO:0016020|GO:0055085
Rops10g01712 633 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 17 623 IPR045042 -
Rops10g01712 633 MobiDBLite consensus disorder prediction 534 576 - -
Rops10g01712 633 MobiDBLite consensus disorder prediction 498 521 - -
Rops10g01712 633 SUPERFAMILY Sm-like ribonucleoproteins 294 364 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01712 Rops-Chr10 32022203 32035097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01712 63 603 Mechanosensitive Ion Channel Family AT1G58200 52.288 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01712 K22047 - gmx:100797302 919.072