Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01710 ATGAAGAGGACGAAGATAAAGATTAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTCTCAAAGAGGAGACGAGGGCTCTTCAAGAAAGCTGAAGAGCTTTCTGTGTTATGCGATGCTGAGGTTGGTCTCATTTGTTTCTCACATACTGGGAAGCTCTTTTATAATGGCAGCTCCAGTATGAAGGACATAATTACGAGATATAATAATACGCACTCTCACGGCGGCTTCAACACATTGGACACACCATCTCTAGACTTGCAGCTAGAGGCTAGCAATAGTGCCCGATTGAGTAGGGAAATTGCAGATAGAACCCAACAACTAAGGCGGATGAAAGGCGACGATCTTGAAGGACTAGACCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCAACCACGTGAATGAGACAAAGGAAAAGCGGATAGTGAGTGAGATTTCTGAACTTCAGAAAAAGGGAATCATGTTAGAAGAAGAGAACAAGCAGTTAAAGCAACAGCTAGAGGAGACGCAGATGGTGGTGGCAATGCAGTGTAAAACAAAGAGTCCTTTCCTGGTGGACTTGGATATTGGAATGCAGGAAGAAGGTATCTCATTAGAGTCTATGAATAACATTAGTAGTTGCATAAGTGACCCTCCTCTTGAAGATGATTGCTCGGATACATCTCTAAAGTTAGGGTTGCCCGTCTCTAAGATGTGA 714 0.43 MKRTKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLICFSHTGKLFYNGSSSMKDIITRYNNTHSHGGFNTLDTPSLDLQLEASNSARLSREIADRTQQLRRMKGDDLEGLDLNELQQLEKTLEIGLNHVNETKEKRIVSEISELQKKGIMLEEENKQLKQQLEETQMVVAMQCKTKSPFLVDLDIGMQEEGISLESMNNISSCISDPPLEDDCSDTSLKLGLPVSKM* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01710 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops10g01710 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops10g01710 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops10g01710 237 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Rops10g01710 237 Coils Coil 125 145 - -
Rops10g01710 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops10g01710 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops10g01710 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Rops10g01710 237 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Rops10g01710 237 Gene3D - 14 75 IPR036879 GO:0003677|GO:0046983
Rops10g01710 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops10g01710 237 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops10g01710 237 Coils Coil 151 178 - -
Rops10g01710 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01710 Rops-Chr10 32009504 32014056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01710 1 233 MADS-box Gene Family AT2G22540 55.417 8.80e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops10g01710 K-box 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01710 - - gmx:100776749 305.834