Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01708 ATGCTGACACACAAACACCGCCACCATCACTCTCTCCCCCACATGGGTTCATTCACCCTCAGATTCTTGTTGTTCCTCCTCCTCATCACTCTCATTCTATTGTGCCCCTATGCAGAGGCCAACAATGAGAGCAAAGAAACCCCACCTCCAAGTTCCCATCTTGATGATGCCGTTGCCATTGCTCCACCTCCACCGTCGAAAAAACCATCCTCGGCGTTCAAACTAAATGTAGTCATTGTGGTGGGTGTTTTGACCATCATGTTTTCCCTCACCTTTCTTCTTCTCCTCTATGTCAGACACTGTGGCAGTGGGAATATCGAAAGTGGAGGGAATATCTCAGCTTCACGAATGGTTCCATCTTTCAGCGGAAGGAAGAACTCTGGTATAGACAGGTCCATAGTGGAATTGTTACCCGTTTTCAGATTCGGATCGTTAAGGGGTCAAAAAGAAGGGCTTGATTGTGCGGTTTGTCTCAACAAGTTTGAAGCTGCAGAGGTTCTTCGACTGTTACCAAAATGCAAGCACGCATTTCACGTGGAATGTGTGGATACATGGTTGGATGCACATTCAACTTGCCCTCTTTGCCGTTACAGAGTGGATCCAGAAGACATTCTTCTAGTGGAGAATGCGAAGGTTCCACGCCAAAATCAACGGAACAAGGAAGAGGAATGTTTGGTGGAGATTGCAGAGTCTAGGAGGAGGCATTCATCGGTGGGGGAAGGTGAAGGGGAAAGGGAGTGGGAGGGAAGGAAAACGGCGTCGTTTAGGAGGTCATTGGATAGTGCCACATCGAGAAAGAAGAACGAGAGCGTGAGCGTTGGAATTGGCATAGGGTGTTTTGTCCGTCCCAGAAAAGACGGGATGTTGTTGACGCGAGACACGGAGGACAGAGAAAGAGAAAGAGAAAGAGACAGGACAAGCGTGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCCTCACCACACACGCTCAGTGGGCTCCACCAACACCAACACCAACGGTGGAGCGACGTGCAACCGTCAGACCTGTTGTATCTAACGTCGGAGATGATAATCAGTGAGTCGCGCCGAGTGACGAGGTTCGTGAACAACAACCACCGTACGAATGATGATGAGATGGTTCGGGACAGTTGGAGTGGCAGGGGAATAATAAATTCGAGAAGCGTGTCTGAAATCACGGGATTGAGCAGGTTCTCGAGCAATAATAACAATGACAACAACAATGGCAGAGGGAGAGAGAGAGAGAGGGAAGAGGGATTGGTGTCCAGGTGGTTAGCTTGGATTTCTCACTCTCACACACAACCAGCTGTACGGTAG 1320 0.4939 MLTHKHRHHHSLPHMGSFTLRFLLFLLLITLILLCPYAEANNESKETPPPSSHLDDAVAIAPPPPSKKPSSAFKLNVVIVVGVLTIMFSLTFLLLLYVRHCGSGNIESGGNISASRMVPSFSGRKNSGIDRSIVELLPVFRFGSLRGQKEGLDCAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVENAKVPRQNQRNKEEECLVEIAESRRRHSSVGEGEGEREWEGRKTASFRRSLDSATSRKKNESVSVGIGIGCFVRPRKDGMLLTRDTEDRERERERDRTSVERRLEHRIIVSPSPHTLSGLHQHQHQRWSDVQPSDLLYLTSEMIISESRRVTRFVNNNHRTNDDEMVRDSWSGRGIINSRSVSEITGLSRFSSNNNNDNNNGRGREREREEGLVSRWLAWISHSHTQPAVR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01708 439 FunFam RING-H2 finger protein ATL43 129 203 - -
Rops10g01708 439 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Rops10g01708 439 SUPERFAMILY RING/U-box 149 201 - -
Rops10g01708 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 205 IPR013083 -
Rops10g01708 439 CDD RING-H2_EL5-like 153 196 - -
Rops10g01708 439 SMART ring_2 154 195 IPR001841 -
Rops10g01708 439 Pfam Ring finger domain 153 196 IPR001841 -
Rops10g01708 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 50 430 - -
Rops10g01708 439 MobiDBLite consensus disorder prediction 44 69 - -
Rops10g01708 439 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01708 Rops-Chr10 31988494 31989813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01708 70 428 C3H Transcription Factor Family AT5G05810 43.734 5.60e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01708 K19041 - cave:132189697 346.665