Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01688 ATGGAATTTGAAGAGCACGAAGACCAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAATGAGATTCACGGTGGCGCCGGCGGCTGGTTACGACTCGTTGGGAAACTCGGCGGCGAGGTCTAAAATGGGCGGTGGAGAGGGAGGTACAGCCACCACCGGAGCTGGTCGCAAAAGTGGGCCCACGGGGACAGTCAGATACAGAGAATGTCAAAAGAACCACGCCGTCAGCATCGGCGGCTACGCCGTTGACGGCTGCTGTGAGTTCTTAGCAGCCGGAGAGGAAGGCACGCTGGAGGCCGTAATTTGCGCTGCCTGTAACTGTCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAAATCACCTCCTATCCCCAACAACCACGGCCACAACCTCAGCCACAGTACCACCATCATCAATTCTCCCCTTACTACCACCGTGCAGCGCCACCACCTGCCGCCGGATACCTCCACCACCACTTGGTAACTCCACCGGTGTCTCAACACCGGCCCTTAGCTCTGCCACTGGCGGCATCCGGCGGGGGTTTCAGTAGAGAAGAGGAAGACATGTCAAATCCAAGCAGCAGCGGTGGCGGTGGCGGTGGAGGTAGCGGCAGTGGAAGGAAGAAAAGGTCTAGGACAAAGTTCACGCAGGAACAAAAGGATAAGATGCTGGCATTTGCGGAGCAACTAGGGTGGAGAATTCAGAAGCATGATGAAGCTGCAGTTGAGCAATTCTGTGCAGAGACTTGTGTGAAGAGACAGGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 819 0.5543 MEFEEHEDQEEEEEEEEEEEMRFTVAPAAGYDSLGNSAARSKMGGGEGGTATTGAGRKSGPTGTVRYRECQKNHAVSIGGYAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEITSYPQQPRPQPQPQYHHHQFSPYYHRAAPPPAAGYLHHHLVTPPVSQHRPLALPLAASGGGFSREEEDMSNPSSSGGGGGGGSGSGRKKRSRTKFTQEQKDKMLAFAEQLGWRIQKHDEAAVEQFCAETCVKRQVLKVWMHNNKHTLGKKP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01688 272 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g01688 272 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Rops10g01688 272 MobiDBLite consensus disorder prediction 1 63 - -
Rops10g01688 272 MobiDBLite consensus disorder prediction 175 218 - -
Rops10g01688 272 FunFam Zinc-finger homeodomain protein 2 201 270 - -
Rops10g01688 272 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Rops10g01688 272 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Rops10g01688 272 Coils Coil 1 21 - -
Rops10g01688 272 Gene3D - 194 269 - -
Rops10g01688 272 NCBIfam homeobox domain, ZF-HD class 209 265 IPR006455 -
Rops10g01688 272 SUPERFAMILY Homeodomain-like 195 270 IPR009057 -
Rops10g01688 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01688 Rops-Chr10 31568868 31570160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01688 15 268 ZF-HD Transcription Factor Family AT4G24660 53.101 2.45e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops10g01688 ZF-HD_dimer 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01688 - - pvu:PHAVU_009G037900g 381.719