Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01677 ATGTGGAAGGCATTCATGAAATGGGGAAGAGTGGCTGAAGTTTTCATTCCGATCAAGAGAAACTCACGAGGACTGAAGTTTGGTTCTGTTAGATTTAAAAAGGAGTCTATATATGGTGATCCAAAGGGAAACTTTAACAATATCTGGATAGGTTCTTATAAAGTGAGGGTCAATCTGTCTCGTTACAGTAGAGAGCTTGCATCTGAAAGGGGGTTTCAGGTACAATCAAGGCAGAATAGTGGTGGGGTGCAGAAGGGTCTGAAGTTCTCGAATGTAGTTAGAGTAGAGGATTTGGTTCCCTCAGATGCATACCCGAATCCCAATACTGACCTTCAGAGGAGGAATACCAAAGTGGAAACTTTCCTCAATAACTTTGGCTGCTCAGAAGGAGACATAAATTTGGAATATGGAAACAGTGAAGATTGCGCTCAGACTGCGCCGTTGTTATACCAAAAGGGTCCAAAATCACCTGTTTTTTCTGAACGTGTTAGGAGGCGAGTTCAGGTTGGTGAGTTAACGGTTGATTGTTTGAAGAGTAAGTGGGTTGATTTTTATGATACTTCCAACCAAAATGGGTCGTTGTGGACTCAACTTAAGGAAATAGGTCCGAGGAGTGTTGAAATTGGCCACACAAACTCTGAAGGAGGGGAAGATTTTGGGTTGAGAACTGGTTCTGATTATGTGGGCTCTGCTAATGTTGTGGGCCAACATAATATGAATGAGTGTGGTATATTTTCAATGCCAACAAAAAACCATATTAGGCCGTCGAGACCACCTAAGATGCAAAGGAGGAAGTTGCATAAAAAACAAAAATTGTTGGCTAGACCAAGGATTCTAGGGAGTTCAAAGCCCTTATTAAGGTTGCAAAGACATGGCTTAAAGGCAGCAACCTTGCTATCACGGTTCTGCTCTAAGCAAGCATCAAGCATAGCCACAATGTGGCTTCATATGGCAGCCCCACATGCACAATGCCAAATTTGCCAACATGAGACTGAGTTGAACTCATACAACTCGTGTTCATGTAGATCTCTCACGGCCAAGGTTGGTCTTTTGCAAACCAAGAGCTTGTATATACTGGGTTGTCATTTGGCACAAGCTCAACAGTTTTCATATTGTCAAGCTCTCACATCCAAGTCCATGAGTTCTTCTCTTCCTTCCTTCATGGTGTTTAGCCCCATAACCCCATTGAGTTGGGTTTCTTTGTTACATGCTTCCCAAGTCATTATCATGAACCACCCTAGTCAGATTGGAAATGGATATGCTCCCGTGCTTGATTGCCACACTTCCCACATCACTGTCAAGTTTGTTGGGCTCGTGACCAAGATTGACAGGCGTTCTGGTAGTGAGAAGGAGCCTGAGTTTTTGAAGAATGGTGATGTAGGTTTTGTTAAAGTGATTCCCAACCAAGCTAATGGTTGTTGA 1422 0.4297 MWKAFMKWGRVAEVFIPIKRNSRGLKFGSVRFKKESIYGDPKGNFNNIWIGSYKVRVNLSRYSRELASERGFQVQSRQNSGGVQKGLKFSNVVRVEDLVPSDAYPNPNTDLQRRNTKVETFLNNFGCSEGDINLEYGNSEDCAQTAPLLYQKGPKSPVFSERVRRRVQVGELTVDCLKSKWVDFYDTSNQNGSLWTQLKEIGPRSVEIGHTNSEGGEDFGLRTGSDYVGSANVVGQHNMNECGIFSMPTKNHIRPSRPPKMQRRKLHKKQKLLARPRILGSSKPLLRLQRHGLKAATLLSRFCSKQASSIATMWLHMAAPHAQCQICQHETELNSYNSCSCRSLTAKVGLLQTKSLYILGCHLAQAQQFSYCQALTSKSMSSSLPSFMVFSPITPLSWVSLLHASQVIIMNHPSQIGNGYAPVLDCHTSHITVKFVGLVTKIDRRSGSEKEPEFLKNGDVGFVKVIPNQANGC* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01677 473 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 405 469 IPR009001 -
Rops10g01677 473 Gene3D Translation factors 403 471 - -
Rops10g01677 473 SUPERFAMILY RNA-binding domain, RBD 2 67 IPR035979 GO:0003676
Rops10g01677 473 PANTHER ELONGATION FACTOR 1 ALPHA 404 468 - -
Rops10g01677 473 Pfam Elongation factor Tu C-terminal domain 405 469 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01677 Rops-Chr10 30957779 30965288 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01677 405 469 Eukaryotic Initiation Factors Gene Family AT5G60390 76.119 3.35e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01677 K03231 - csin:114285373 113.62