Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01672 ATGGCAGAAGAACCACCTATCACCACCTGCTTCTCCGCAGCCGCCGAAGACAAAATGAAAGCCTCTTCGACAGAAACATCGTCATTGCCAGATCTAAACGGATTAACAATCCATGATAATGAGAATCACCCGGAGTTGTTGGAGGATTCAAACATCAAAGTGGTTACCTCCGGGGACACTCCGTATACCTCGGCGGTCACCTTTGAAAACTTGAAACTCTCATCGGAGCTACTGAAGGGAATATATGTGGAGATGAAATTCAATAAACCTAGCAAAATTCAAGCCATAAGCTTGCCTATGATAGTTAGCCCTCCACATAGGGATTTGATCGCACAAGCTCATAATGGTTCTGGCAAGACCACTTGTTTTGTTCTTGGGATGCTTAGTCGCATGGATCCCAATTTGAGAGAACCTCAAGCTCTCTGCATTTGCCCCACCAGGGAGTTGGCTATTCAGAATGATGAGGTTGTGCAAAGGATGGGAAAGTACATGGGGATTAGTTCAGAACTTGCTGTGTCCGGGTACAGGAAGGTTGAGCTTCCCATACCAAAACGAGGTCCTGTCATGGCTCAAGTTGTTATTGGAACTCCTGGCACCATAAAGAAGTTGATGTCTTATAAAAAACTCAGAGTAACAAGACTGAAGATTCTTGTTTTTGATGAGGCTGATCTAATGCTTGATGAGGATGGATTTAGAGATGATTCCCTCAAAATAATGAAAGAGATAGGAAAATTCAATTCTAACTGCCAGGTTCTTCTGTTTTCTGCTACATTCAATGACACTGTCAAGGATTTTGTTTCAAAGACAGTTAAGAAGGACCATAATGAACTTTTTGTGGAGAAAAAAGAATTATCTTTAGATGCAGTGAAGCAATATAAAGTACATTGTCCTGATGAGCTCTCTAAGGTTGAAGTGATAAAAGATTATATATTGGAAAATGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACAAGAAATAGTGCGAAAGTATTGCACAAAGCACTTGTTGCTATGGACTATGATGTTACTAGCATACAAGGTGCTCTTGACCATGAAGAGAGAGACAAGATTGTCAAGGAGTTCAAAGCTGGTTTGACTCACGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGAAACAGGTTAATTTGGTTGTCAACTATGATCTTCCGGTGAAATACATTGTTGAGTATACCTGTGAACCAGAGCCTGACTATGAGGTGTATTTGCATAGGGTTGGGAGGGCTGGGCGTTTTGGCCGCGAAGGGGCTGTATTTAACCTGATATGTGATGAAAAGGATGAAAAGCTCATGTCGAAGATTGAGAATCATTTTGGCATCCACGTAGCTGAGGTGCAAGAAAAAAGTGTTGAAGACTTTAAAGGTGCTCTTAAGAAAGCTGGCTTATTGCGATGA 1428 0.416 MAEEPPITTCFSAAAEDKMKASSTETSSLPDLNGLTIHDNENHPELLEDSNIKVVTSGDTPYTSAVTFENLKLSSELLKGIYVEMKFNKPSKIQAISLPMIVSPPHRDLIAQAHNGSGKTTCFVLGMLSRMDPNLREPQALCICPTRELAIQNDEVVQRMGKYMGISSELAVSGYRKVELPIPKRGPVMAQVVIGTPGTIKKLMSYKKLRVTRLKILVFDEADLMLDEDGFRDDSLKIMKEIGKFNSNCQVLLFSATFNDTVKDFVSKTVKKDHNELFVEKKELSLDAVKQYKVHCPDELSKVEVIKDYILENGENVGQTIIFVRTRNSAKVLHKALVAMDYDVTSIQGALDHEERDKIVKEFKAGLTHVLISTDVLARGFDQKQVNLVVNYDLPVKYIVEYTCEPEPDYEVYLHRVGRAGRFGREGAVFNLICDEKDEKLMSKIENHFGIHVAEVQEKSVEDFKGALKKAGLLR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01672 475 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 444 - -
Rops10g01672 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 276 IPR014001 -
Rops10g01672 475 Gene3D - 283 472 IPR027417 -
Rops10g01672 475 SMART ultradead3 86 292 IPR014001 -
Rops10g01672 475 Pfam Helicase conserved C-terminal domain 302 424 IPR001650 -
Rops10g01672 475 CDD SF2_C_DEAD 289 433 - -
Rops10g01672 475 CDD DEADc_DDX19_DDX25 73 277 - -
Rops10g01672 475 SMART helicmild6 331 424 IPR001650 -
Rops10g01672 475 Pfam DEAD/DEAH box helicase 92 264 IPR011545 GO:0003676|GO:0005524
Rops10g01672 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 442 IPR027417 -
Rops10g01672 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 472 IPR001650 -
Rops10g01672 475 Gene3D - 49 282 IPR027417 -
Rops10g01672 475 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 95 IPR014014 GO:0003724
Rops10g01672 475 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01672 Rops-Chr10 30800532 30804318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01672 67 456 Eukaryotic Initiation Factors Gene Family AT1G72730 36.456 5.85e-72 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01672 K18655 - gmx:100784739 650.588