Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01660 ATGTCTGGACTGATCGATCCCATTAGCAAGGTTTATACGGGGCGTGAAGCTTGGAGATTAAAGGGAGAAAGAATTCAAGCTTCAGTGAAGAATACACTGTTGTACAAGTTCAAGCATTTTCTCCGTGAGGGATCTGTCTTTATCTTCACTCATTTCATTGTTATTCCCAATGTTGGGATGTACAGGGCAACTTCACACTCATTTCGGTTGCTTTTTACATTTAAGACTAAGTACATTGTGCTTGAGTCTTCTATTATTCCTTTGCTTGGCTTGCGCTTGGTTCCGTTTGATGATGTGCTTAAAAATGATCATGACTCTGATTATTTAGTTGATGTTATTGGTCTGTTGACTTCTGTTTCCTTTGAGAAGGACATTGAAAATGATGGGAAATTGTCCAAGATGATTGTTATTGAGTTGACTTCAGATAAGGGTAAATTGGAATGTGCTCTATTCGGTGATTATGTTGGGACCTTGATGAATTTTGTTGTTGTGGGTGTCAATGAGCATCCGATGGTGATTATTCAATTTGTGAAAGTTAAATTATTTAGAGGCAAAATAGTGCTTCAAAATGTCATGCATGCAACGCAACTCTTGTTTAATCCTGATGTTGCAGAAGCTGTGGATTTTAGGAATGGGATTGTTGAAAATGGAATTATTGATGGTGTTCCTTTTCTATCTGGGAATGATTCATTTAGTTTGTCTGCTGAGGATGAGTTCATGAAGTTGTACCCAAAGAAATCTCTCAAGTATGAGCTAATTATCAATGCCAAAGATTATAGTGGAGATAACATGTTTGTTATCTTTGATCGTGATGCTCAGTATTTACTAAAGAATGAGTGTGATGATTTATTGTTTGAAGAGAAGAAGTACTTGACTGGTGATGAAATTCCTGGTCTCTTTGATGAGTTGGTTGGGAAGAGATTGTTATTTAAGATTGAGGTTAAGGTTGACAGATCTGGGCACTATGATGGTTCATTCCGTGTTAAGAAAGTTTGTGATGATGAAAGTGTGATTTCTATGTATATGTTGAATGGTGCTGAGTGTACCCCAACAAAGTCAACTTTCAAGGTTCCTTTCACTTCCATTGTTGATTCTACATCCATTGGATTGAGAGATAATGGGGACGTGTCTGAGCAATGTCAAACAGAAGTCACTGTTACTCCTTTTGATGGAGGTAGTTTTGCTTCTTATCCTGGTTATGTGGCTATCGAGCGGAAACTAGAAGATAACTTTGTGATGGATGATGATGATCACAATGATAGAATTGTCAAGGATCTTCATAAGGATATGAAGGATGTTTGTGATGTTGACCAGTACCTTTCGTTGGACAAATTGGAGTGTTCAATAAATGATACTAAGGAGAATGTTGGAATTCCTAGCTTGAAGATGGTTAAGGTGGAGTCAATATCGCCACTGAGTAGTACAAAAGGACAGTTGTGTGGTTCATCTATATTAGATGTTGAAAGTTCAAGAATTACATCTTATGATATTGGTTGCTCATCTAATGGTGCAAGTCAATTGTTTGATGATGGTGAAGATGTGGTTGATTTCCCGTCAAATGTTGATCAAGAATTTTTTATTGAACATGTTTTGTTTCAACCTAGCGAAGATGAAGTATGTCTTGATTTTGGGGATAATGTTTTTACTTGCGCGAATTGTGGTGCCATGGCTTGGTATGAAGAACGTTCTGATAAGTCAAACTGTATTAGCAATCCTCAATTCTCCATTTTTTGTATGAAGGGAAAGATAATTCTTCCTTATTTGAGTAGGCCACCTGATCTGATATGGAATTTGGTCAATGGTTTTGATGCTCGAAGTGTGCATTTTATTGAGAATATTCGGTCCTATAACAGTATGTTTGTTTTTACTTCAATTGGTGGCAAGATTGAAACGAGTGTTAATAATGGTGGTGGTCCTCCTCAATTTATTCTTAGTGGCCAGAATTTTCACAGGATTGGTTCATTATTACCTGTTGAAGGTGAAAGGCTGAAGTTTTCGCAGATGTATATTTATGATACAGGCAATGAGATTGACAAGTTATTGGTCAGGGATTTGATAGTCATGATCGATGAACATAATGTTTTTGCCAAAACATTTCGAATGGTTCGTGATTTGTATGAGCGAGATCATGGTATTCGTGTATGTCTTCGTTTGATTCGAAACCGTACTAATGATGGTCGAGTTTATAACTTGCCTACTGTTGATGAAGTTGTTGCGTTAATAGTGGATGACTTCGATGGTTCTGATTGTGATGCACTTTACAAATGGGGTTTTACCCTGCTAAGAATAGCAATGAAGATTCAGATTTGGGTCAAGGTTTTGTTGGTTGAAGTCAAAGGGAACAAAGTCTTCAAGATTAGGATAACTGGTCCTGATCTTTTAGATATTAATTATAAGGTTGGTGATGTTGGTCCATTTGCTGGAGATGTTATTAGGAATGACAATGTTGGTGGTGATGGCAGTGATGTTGGTAGTCAGTTTCAGCTCTTGTGGTCTGTCCAATTATCTGAAGCCCAATTGTTTGGTCGTCAGACTTTGACTAGGCAGGACAAGGCTGCCATTGGGATGGGGTGGTACAAGTTTTGCTCTGACAAGAAGCTGAAGAAGGGTGATAAAGTGAACTTTATGTATGAAAGCTCGGAGAAGACATTCTGTGTTGATGTGGAGTCCTCTGCCTAA 2679 0.3781 MSGLIDPISKVYTGREAWRLKGERIQASVKNTLLYKFKHFLREGSVFIFTHFIVIPNVGMYRATSHSFRLLFTFKTKYIVLESSIIPLLGLRLVPFDDVLKNDHDSDYLVDVIGLLTSVSFEKDIENDGKLSKMIVIELTSDKGKLECALFGDYVGTLMNFVVVGVNEHPMVIIQFVKVKLFRGKIVLQNVMHATQLLFNPDVAEAVDFRNGIVENGIIDGVPFLSGNDSFSLSAEDEFMKLYPKKSLKYELIINAKDYSGDNMFVIFDRDAQYLLKNECDDLLFEEKKYLTGDEIPGLFDELVGKRLLFKIEVKVDRSGHYDGSFRVKKVCDDESVISMYMLNGAECTPTKSTFKVPFTSIVDSTSIGLRDNGDVSEQCQTEVTVTPFDGGSFASYPGYVAIERKLEDNFVMDDDDHNDRIVKDLHKDMKDVCDVDQYLSLDKLECSINDTKENVGIPSLKMVKVESISPLSSTKGQLCGSSILDVESSRITSYDIGCSSNGASQLFDDGEDVVDFPSNVDQEFFIEHVLFQPSEDEVCLDFGDNVFTCANCGAMAWYEERSDKSNCISNPQFSIFCMKGKIILPYLSRPPDLIWNLVNGFDARSVHFIENIRSYNSMFVFTSIGGKIETSVNNGGGPPQFILSGQNFHRIGSLLPVEGERLKFSQMYIYDTGNEIDKLLVRDLIVMIDEHNVFAKTFRMVRDLYERDHGIRVCLRLIRNRTNDGRVYNLPTVDEVVALIVDDFDGSDCDALYKWGFTLLRIAMKIQIWVKVLLVEVKGNKVFKIRITGPDLLDINYKVGDVGPFAGDVIRNDNVGGDGSDVGSQFQLLWSVQLSEAQLFGRQTLTRQDKAAIGMGWYKFCSDKKLKKGDKVNFMYESSEKTFCVDVESSA* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01660 892 Gene3D - 16 79 IPR012340 -
Rops10g01660 892 Gene3D - 816 891 IPR015300 -
Rops10g01660 892 SUPERFAMILY DNA-binding pseudobarrel domain 849 886 IPR015300 -
Rops10g01660 892 CDD RPA1_DBD_A_like 21 77 - -
Rops10g01660 892 Pfam Domain of unknown function DUF223 21 109 IPR003871 -
Rops10g01660 892 ProSiteProfiles B3 DNA-binding domain profile. 831 892 IPR003340 GO:0003677
Rops10g01660 892 SUPERFAMILY Nucleic acid-binding proteins 92 212 IPR012340 -
Rops10g01660 892 PANTHER DNA BINDING PROTEIN-LIKE 599 749 - -
Rops10g01660 892 Gene3D - 86 218 IPR012340 -
Rops10g01660 892 Gene3D - 236 338 IPR012340 -
Rops10g01660 892 CDD RPA1_DBD_B_like 111 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01660 Rops-Chr10 30506990 30526872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01660 22 210 Core DNA Replication Machinery Family AT2G06510 25.888 1.44e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01660 - - adu:107465235 271.166