Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01658 ATGTGGCACGTTAAGATGGCTGAGTTGTCACAAAACACTCCCCATAAGCTTGCCACGTCACCGGGGCTGGAAAACCGTCACTATGTGGCATCAGCGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACGGTTCTCCTCCAATTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGCCATTTTCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 288 0.4722 MWHVKMAELSQNTPHKLATSPGLENRHYVASAKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQPFSICLTSFGTKLACE* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01658 95 PANTHER TUBBY-RELATED 26 93 - -
Rops10g01658 95 Gene3D Tubby Protein; Chain A 15 95 IPR025659 -
Rops10g01658 95 PRINTS Tubby superfamily signature 52 71 IPR000007 -
Rops10g01658 95 PRINTS Tubby superfamily signature 73 95 IPR000007 -
Rops10g01658 95 PRINTS Tubby superfamily signature 23 39 IPR000007 -
Rops10g01658 95 Pfam Tub family 25 90 IPR000007 -
Rops10g01658 95 SUPERFAMILY Tubby C-terminal domain-like 26 95 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01658 Rops-Chr10 30481676 30482116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01658 26 95 TUB Transcription Factor Family AT1G53320 91.429 1.04e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops10g01658 Tub 1.2e-25 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01658 K19600 - gmx:100808096 132.494