Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g01657 | ATGTCCGCCCCACCGGTACGGTTGCACATCCAACAGCACCATGTGGTGATGGATAATGGCATACTCCAAGTTACTTTGTCAAATCCAGATGGAATCGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAACCTAATAGAGGGTACTGGGATCTTATGTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAACGTGGGATCCTTCTCTCGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTAGTGAAACCAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCATTACATGGCTATGGCAGACAATAGAAGAAGGATTATGCCTTTTCCAGAGGATCGGTTACCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACGACTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGAAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAATCCACCTGTAGGATTTTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCACAAACAGAATTTGACCTCACATGTAGGACCCACCATGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATCTGGTGCCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTCAATTCCACATCAATCGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGACGATGACTGAAGTTCAAAATTGGCCTTATTGTTTCCCTGCTTCAGAGGATTTTTTAAAATCAGATCAACGGGCCAATGTTAATGGCAGATTACTTGTCTTAGACAGGTACATCAGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTAGCCCCACCGGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGAGAATGGATTTTTTACGATTAACAATATACGTGTAGGTGACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGAGACTACAGATTTGGTGATTTTATGAAGATAACCTCAGGTTCTTACATTGAATTGGGTGAACTTGTATACGAGCCTCCAAGGGATGGTCCCACGTTGTGGGAAATAGGCATTCCTGATAGATCAGCTGCAGAATTTTGTATTCCTGATCCCAATCCACAACATAATAATAATCTTTTTATTAACCATCCAGACAGGTTCAGGCAATATGGGTTATGGGACAGATACACAGAATTGTATCCTGATGCAGATTTGGTTTATACAATTGGTGTTAGTGACTATACGAAGGATTGGTTTTTCGCTCAGGTTCCCAGAAAAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTTGGAATCAGTAATGTGGTTCAGGGAAGTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTACAGATTCGAATAAATGATCCCAATGCAAGGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAGTTGCAAGACACGGAATTCATGGACTCTATTGGCTGTACAATGTGAACATACCAAGTTCTCTTCTTATTGATGGCACTAATACTATATATTTTACGCAACCAAGAAGCACCAGTCCCTTCCAGGGTATCATACTCCAGGCACCGGAATTGAACGCCATTTTTGAAGCATTTGGAGCTTCATTGTTTAAGAAGACGGTGGTGATGGACAATGGCATACTGAGAGTCACCTTATCAAATCCTGAGGGAATTGTCACTGGAATACAGTATAATGACATTGACAACTTGCTTGAAGTTTTGAATGAGGAATCTAATAGAGGGTATTGGGACCTAGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGTAGATTTGATGTGATAAAGGGAACCACTTTCGAAGTTATAGTGGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACATGGGATGCCACCCTCGAGGGAAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTGTTCCGGATTCTACACCTATGCAATTTATGAGCACCTAGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAGTTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCAATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGATCGATCACCACCAAGAGGCCAAGCACTTGCCTACCCAGAGGCAGTTCTACTTGTCAATCCTATTGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCGGGTGTGGGATTCTGGCTAATTACTCCTAGCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCTCACGTGGGACCTACCACGCTTGCTGTGTTTCTAAGTGCTCATTATAGTGGAGAGGACCTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTTCGTATGATGGAGGTGACCCCCTTAAGCTATGGGATGACGCCAAATTGCAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAGTTTTCCTGAATCAGAGGATTTCCTTAAGTGGGACCAACGCGGTTATGTCAGTGGCAGGCTATTGGTTAGAGAGAGGTATATAAGCGACGATTATATATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGAGACTTGGGGTCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTATTTCTCCATCTGCAATATACGTGCTGGCGACTATAACCTTTATGCTTGGGTACCTGGTTATATTGGTGACTATAAATATGATGTAATTATGAACATAACAGAGGGTTGTGACATTGACATTGGTGATCTTGTATATGAACCTCCAAAAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATAAACAAACTCTATATTAATCATCCTGACAAGTTTAGGCAATATGGGTTGTGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATCTACATAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACACATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGATAATGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTTTGGCATCAGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCAAATCGCCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCACGGAATTCATGGGCTTTATTGGCTTTACAATGTGGACATACCGGTACTAATCCAGGTGGTAATGGATAATGGCATAGTCCAGGTCAATTTATCAAATCCCGAAGGAATTGTCATAGGAATTCAATATAATGGGCTCGACAATTTGCTCGAAATTCTTAACCATGAATCTGACAGAGGGTACTGGGATATTGTATGGGACGAGGGTGGGAAAAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGGATGGAAGCCACAAATTTTACAGTGATAGTGGAAAATGAAGAACAAGTAGAACTATCTTTCACTAGAATATGGAATTTCTCTCTTGAGGGGAAGCTAGCGCCTCTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGGTTCTACACTTATGCCATTTACGAACATTTGAAGGAATGGCCTGCTTTTGATCTTGACAATACTAGGATTGCCTTCAAGCTTAGGAAAGACAAGTTCCATTACATGGTAGTAGCAGACGATAGGCAAAGATTTATGCCTCTGCCGGATGACCGGTCACCGGAAAGAGGTGAAGTTCTGGCGTACCCAGAGGCTGTCCGGCTTGTCAATCCGGTGGAGCCGGAGTTCAAGGGAGAGGTGGATGACAAGTACCAGTACTCGTGTGAGAGCAGACACAACCATGTTCATGGCTGGATCTGCATCGATCCATCGGAATCCCTTGGATTCTGGCTAATTACGCCCAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACCTTACTTCCCACGTGGGCCCCACCACCCTCTCTGTATTTCATAGCACGCATTATTCAGGGGCAGATCTGATAATGAAATTTGGACCCAATGAGCCGTGGAAGAAAGTGTATGGGCCCATATTCATCTACCTTAATTCCCTGACTAATGGGCTTAGCCCCATCATGCTCTGGGAGGACGCTAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCATATACATTTGCAGCTTCAGAGGACTTTCTCACATCTGACCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTATATAAATGATGCATTCATCCCAGTCAGCGATGCTTATGTGGGATTAGTATTTACAAGAGATGTTGGATCTTGGCAAAGAGAAACCAAGGGTTATCAATTTTGGACCATTACTGATAATCAAGGCCATTTCTCAATTATTAACATACGTCCTGGGGACTATAATCTGCACTCCTGGGTCAATGGATACATTGGTGATTATCAATATGATAGCATCCTTAACGTAACCTCAGGTTGTGAAATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACTTTGTGGGAAATAGGCATCCCTGATCGATCAGCTGCTGAGTTCTATGTTCCTGATCCAAACCCCATGTACATAAACAGACTTTATGTCAACCATGCAGATAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCCGATTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACACTAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAGAAAGACAATAATACTTACCATGGAACCACATGGCAAATTAATTTCAATCTTGATTATGTGAATACCAATGGAACCTACAAATTGCGACTGGCTCTGGCATCTGTGCATTCTGCTGAGCTACAGATTCGTATAAACAATTCAGAAGCAAATCCACCTTTATTTTCAACTGGAGTAATTGGAAAAGAGAATACCATAGCCAGACATGGAATTCACGGGATATACTGGCTATACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACCATTTTTCTAACGCAAGCAAGCAACACAAGTCCTTTTCAAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCCCTTACATAAATTATAAAGATCAAAACTAA | 5610 | 0.42 | MSAPPVRLHIQQHHVVMDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKEPNRGYWDLMWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRTWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFHYMAMADNRRRIMPFPEDRLPGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQYSCENMDNRVHGWISFNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTMLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSTSIGDDPLWLWEDAKIQTMTEVQNWPYCFPASEDFLKSDQRANVNGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTINNIRVGDYNLFAWVPGFVGDYRFGDFMKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFCIPDPNPQHNNNLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYTKDWFFAQVPRKKEDNTHQGTTWQIKFGISNVVQGSTYKLRVAIASATLAELQIRINDPNARRPLFTTGLIGRDNSVARHGIHGLYWLYNVNIPSSLLIDGTNTIYFTQPRSTSPFQGIILQAPELNAIFEAFGASLFKKTVVMDNGILRVTLSNPEGIVTGIQYNDIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGRFDVIKGTTFEVIVENEDQVELSFTRTWDATLEGKLVPLNIDKRFIMLRGCSGFYTYAIYEHLEDWPAFNLDETRVAFKLRKDKFHYMAMADNRQRNMPLPDDRSPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPGVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSYDGGDPLKLWDDAKLQMLVEVQSWPYSFPESEDFLKWDQRGYVSGRLLVRERYISDDYISAKGAYVGLAPPGDLGSWQRECKNYQFWAKADDDGYFSICNIRAGDYNLYAWVPGYIGDYKYDVIMNITEGCDIDIGDLVYEPPKDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYINHPDKFRQYGLWERYAELYPDKDLIYIVGVSDYTKDWFFAQVTRKKDDNTHQGTTWQIKFQLDNVNKSSSYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPVLIQVVMDNGIVQVNLSNPEGIVIGIQYNGLDNLLEILNHESDRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEATNFTVIVENEEQVELSFTRIWNFSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFHYMVVADDRQRFMPLPDDRSPERGEVLAYPEAVRLVNPVEPEFKGEVDDKYQYSCESRHNHVHGWICIDPSESLGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMKFGPNEPWKKVYGPIFIYLNSLTNGLSPIMLWEDAKQQMVNEVESWPYTFAASEDFLTSDQRGKVEGRLLVRDRYINDAFIPVSDAYVGLVFTRDVGSWQRETKGYQFWTITDNQGHFSIINIRPGDYNLHSWVNGYIGDYQYDSILNVTSGCEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINRLYVNHADRFRQYGLWERYADLYPNEDLVYTVGISDYTKDWFFAQVNRKKDNNTYHGTTWQINFNLDYVNTNGTYKLRLALASVHSAELQIRINNSEANPPLFSTGVIGKENTIARHGIHGIYWLYSIDVQGTLLVQGNNTIFLTQASNTSPFQGILYDYIRLEGPPYINYKDQN* | 1870 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g01657 | 1869 | CDD | RGL4_C | 1074 | 1228 | - | - | |
Rops10g01657 | 1869 | CDD | RGL4_C | 1671 | 1858 | - | - | |
Rops10g01657 | 1869 | FunFam | Rhamnogalacturonate lyase B | 1557 | 1656 | - | - | |
Rops10g01657 | 1869 | Pfam | Polysaccharide lyase family 4, domain II | 1585 | 1655 | IPR029413 | - | |
Rops10g01657 | 1869 | Pfam | Polysaccharide lyase family 4, domain II | 986 | 1058 | IPR029413 | - | |
Rops10g01657 | 1869 | Pfam | Polysaccharide lyase family 4, domain II | 354 | 426 | IPR029413 | - | |
Rops10g01657 | 1869 | CDD | RGL4_N | 14 | 293 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 1070 | 1247 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 438 | 626 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 1667 | 1858 | - | - | |
Rops10g01657 | 1869 | CDD | RGL4_N | 635 | 933 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 634 | 935 | IPR014718 | GO:0030246 | |
Rops10g01657 | 1869 | Gene3D | - | 8 | 303 | IPR014718 | GO:0030246 | |
Rops10g01657 | 1869 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Rops10g01657 | 1869 | CDD | RGL4_M | 1560 | 1659 | IPR029413 | - | |
Rops10g01657 | 1869 | FunFam | Rhamnogalacturonate lyase B | 328 | 427 | - | - | |
Rops10g01657 | 1869 | CDD | RGL4_C | 442 | 628 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 352 | 414 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 962 | 1054 | - | - | |
Rops10g01657 | 1869 | Gene3D | - | 1557 | 1656 | - | - | |
Rops10g01657 | 1869 | Pfam | Polysaccharide lyase family 4, domain III | 1669 | 1857 | IPR029411 | - | |
Rops10g01657 | 1869 | Pfam | Polysaccharide lyase family 4, domain III | 1072 | 1237 | IPR029411 | - | |
Rops10g01657 | 1869 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 623 | IPR029411 | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Starch-binding domain-like | 372 | 411 | IPR013784 | GO:0030246 | |
Rops10g01657 | 1869 | SUPERFAMILY | Starch-binding domain-like | 1006 | 1051 | IPR013784 | GO:0030246 | |
Rops10g01657 | 1869 | Pfam | Rhamnogalacturonate lyase family | 1232 | 1427 | IPR010325 | - | |
Rops10g01657 | 1869 | Pfam | Rhamnogalacturonate lyase family | 641 | 832 | IPR010325 | - | |
Rops10g01657 | 1869 | Pfam | Rhamnogalacturonate lyase family | 9 | 200 | IPR010325 | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Starch-binding domain-like | 1559 | 1656 | IPR013784 | GO:0030246 | |
Rops10g01657 | 1869 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 11 | 624 | - | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Galactose-binding domain-like | 1666 | 1858 | IPR008979 | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Galactose mutarotase-like | 640 | 924 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Rops10g01657 | 1869 | FunFam | Rhamnogalacturonate lyase B | 960 | 1059 | - | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Galactose-binding domain-like | 1069 | 1234 | IPR008979 | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Galactose-binding domain-like | 437 | 624 | IPR008979 | - | |
Rops10g01657 | 1869 | CDD | RGL4_M | 963 | 1062 | IPR029413 | - | |
Rops10g01657 | 1869 | CDD | RGL4_N | 1232 | 1520 | - | - | |
Rops10g01657 | 1869 | SUPERFAMILY | Galactose mutarotase-like | 14 | 296 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g01657 | Rops-Chr10 | 30465200 | 30491411 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g01657 | 1 | 622 | Polysaccharide Lyase | AT1G09910 | 71.222 | 0.0 | 944 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g01657 | K18195 | - | gmx:100814185 | 1185.24 |