Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01657 ATGTCCGCCCCACCGGTACGGTTGCACATCCAACAGCACCATGTGGTGATGGATAATGGCATACTCCAAGTTACTTTGTCAAATCCAGATGGAATCGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAACCTAATAGAGGGTACTGGGATCTTATGTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAACGTGGGATCCTTCTCTCGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTAGTGAAACCAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCATTACATGGCTATGGCAGACAATAGAAGAAGGATTATGCCTTTTCCAGAGGATCGGTTACCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACGACTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGAAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAATCCACCTGTAGGATTTTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCACAAACAGAATTTGACCTCACATGTAGGACCCACCATGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATCTGGTGCCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTCAATTCCACATCAATCGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGACGATGACTGAAGTTCAAAATTGGCCTTATTGTTTCCCTGCTTCAGAGGATTTTTTAAAATCAGATCAACGGGCCAATGTTAATGGCAGATTACTTGTCTTAGACAGGTACATCAGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTAGCCCCACCGGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGAGAATGGATTTTTTACGATTAACAATATACGTGTAGGTGACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGAGACTACAGATTTGGTGATTTTATGAAGATAACCTCAGGTTCTTACATTGAATTGGGTGAACTTGTATACGAGCCTCCAAGGGATGGTCCCACGTTGTGGGAAATAGGCATTCCTGATAGATCAGCTGCAGAATTTTGTATTCCTGATCCCAATCCACAACATAATAATAATCTTTTTATTAACCATCCAGACAGGTTCAGGCAATATGGGTTATGGGACAGATACACAGAATTGTATCCTGATGCAGATTTGGTTTATACAATTGGTGTTAGTGACTATACGAAGGATTGGTTTTTCGCTCAGGTTCCCAGAAAAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTTGGAATCAGTAATGTGGTTCAGGGAAGTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTACAGATTCGAATAAATGATCCCAATGCAAGGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAGTTGCAAGACACGGAATTCATGGACTCTATTGGCTGTACAATGTGAACATACCAAGTTCTCTTCTTATTGATGGCACTAATACTATATATTTTACGCAACCAAGAAGCACCAGTCCCTTCCAGGGTATCATACTCCAGGCACCGGAATTGAACGCCATTTTTGAAGCATTTGGAGCTTCATTGTTTAAGAAGACGGTGGTGATGGACAATGGCATACTGAGAGTCACCTTATCAAATCCTGAGGGAATTGTCACTGGAATACAGTATAATGACATTGACAACTTGCTTGAAGTTTTGAATGAGGAATCTAATAGAGGGTATTGGGACCTAGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGTAGATTTGATGTGATAAAGGGAACCACTTTCGAAGTTATAGTGGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACATGGGATGCCACCCTCGAGGGAAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTGTTCCGGATTCTACACCTATGCAATTTATGAGCACCTAGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAGTTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCAATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGATCGATCACCACCAAGAGGCCAAGCACTTGCCTACCCAGAGGCAGTTCTACTTGTCAATCCTATTGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCGGGTGTGGGATTCTGGCTAATTACTCCTAGCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCTCACGTGGGACCTACCACGCTTGCTGTGTTTCTAAGTGCTCATTATAGTGGAGAGGACCTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTTCGTATGATGGAGGTGACCCCCTTAAGCTATGGGATGACGCCAAATTGCAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAGTTTTCCTGAATCAGAGGATTTCCTTAAGTGGGACCAACGCGGTTATGTCAGTGGCAGGCTATTGGTTAGAGAGAGGTATATAAGCGACGATTATATATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGAGACTTGGGGTCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTATTTCTCCATCTGCAATATACGTGCTGGCGACTATAACCTTTATGCTTGGGTACCTGGTTATATTGGTGACTATAAATATGATGTAATTATGAACATAACAGAGGGTTGTGACATTGACATTGGTGATCTTGTATATGAACCTCCAAAAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATAAACAAACTCTATATTAATCATCCTGACAAGTTTAGGCAATATGGGTTGTGGGAGAGATATGCAGAGTTATACCCTGACAAAGACTTGATCTACATAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACACATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGATAATGTGAACAAAAGCAGTAGCTATAAACTGCGAGTGGCTTTGGCATCAGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCAAATCGCCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCACGGAATTCATGGGCTTTATTGGCTTTACAATGTGGACATACCGGTACTAATCCAGGTGGTAATGGATAATGGCATAGTCCAGGTCAATTTATCAAATCCCGAAGGAATTGTCATAGGAATTCAATATAATGGGCTCGACAATTTGCTCGAAATTCTTAACCATGAATCTGACAGAGGGTACTGGGATATTGTATGGGACGAGGGTGGGAAAAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGGATGGAAGCCACAAATTTTACAGTGATAGTGGAAAATGAAGAACAAGTAGAACTATCTTTCACTAGAATATGGAATTTCTCTCTTGAGGGGAAGCTAGCGCCTCTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGGTTCTACACTTATGCCATTTACGAACATTTGAAGGAATGGCCTGCTTTTGATCTTGACAATACTAGGATTGCCTTCAAGCTTAGGAAAGACAAGTTCCATTACATGGTAGTAGCAGACGATAGGCAAAGATTTATGCCTCTGCCGGATGACCGGTCACCGGAAAGAGGTGAAGTTCTGGCGTACCCAGAGGCTGTCCGGCTTGTCAATCCGGTGGAGCCGGAGTTCAAGGGAGAGGTGGATGACAAGTACCAGTACTCGTGTGAGAGCAGACACAACCATGTTCATGGCTGGATCTGCATCGATCCATCGGAATCCCTTGGATTCTGGCTAATTACGCCCAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACCTTACTTCCCACGTGGGCCCCACCACCCTCTCTGTATTTCATAGCACGCATTATTCAGGGGCAGATCTGATAATGAAATTTGGACCCAATGAGCCGTGGAAGAAAGTGTATGGGCCCATATTCATCTACCTTAATTCCCTGACTAATGGGCTTAGCCCCATCATGCTCTGGGAGGACGCTAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCATATACATTTGCAGCTTCAGAGGACTTTCTCACATCTGACCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTATATAAATGATGCATTCATCCCAGTCAGCGATGCTTATGTGGGATTAGTATTTACAAGAGATGTTGGATCTTGGCAAAGAGAAACCAAGGGTTATCAATTTTGGACCATTACTGATAATCAAGGCCATTTCTCAATTATTAACATACGTCCTGGGGACTATAATCTGCACTCCTGGGTCAATGGATACATTGGTGATTATCAATATGATAGCATCCTTAACGTAACCTCAGGTTGTGAAATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACTTTGTGGGAAATAGGCATCCCTGATCGATCAGCTGCTGAGTTCTATGTTCCTGATCCAAACCCCATGTACATAAACAGACTTTATGTCAACCATGCAGATAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCCGATTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACACTAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAGAAAGACAATAATACTTACCATGGAACCACATGGCAAATTAATTTCAATCTTGATTATGTGAATACCAATGGAACCTACAAATTGCGACTGGCTCTGGCATCTGTGCATTCTGCTGAGCTACAGATTCGTATAAACAATTCAGAAGCAAATCCACCTTTATTTTCAACTGGAGTAATTGGAAAAGAGAATACCATAGCCAGACATGGAATTCACGGGATATACTGGCTATACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACCATTTTTCTAACGCAAGCAAGCAACACAAGTCCTTTTCAAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCCCTTACATAAATTATAAAGATCAAAACTAA 5610 0.42 MSAPPVRLHIQQHHVVMDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKEPNRGYWDLMWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRTWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFHYMAMADNRRRIMPFPEDRLPGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQYSCENMDNRVHGWISFNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTMLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSTSIGDDPLWLWEDAKIQTMTEVQNWPYCFPASEDFLKSDQRANVNGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTINNIRVGDYNLFAWVPGFVGDYRFGDFMKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFCIPDPNPQHNNNLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYTKDWFFAQVPRKKEDNTHQGTTWQIKFGISNVVQGSTYKLRVAIASATLAELQIRINDPNARRPLFTTGLIGRDNSVARHGIHGLYWLYNVNIPSSLLIDGTNTIYFTQPRSTSPFQGIILQAPELNAIFEAFGASLFKKTVVMDNGILRVTLSNPEGIVTGIQYNDIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGRFDVIKGTTFEVIVENEDQVELSFTRTWDATLEGKLVPLNIDKRFIMLRGCSGFYTYAIYEHLEDWPAFNLDETRVAFKLRKDKFHYMAMADNRQRNMPLPDDRSPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPGVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSYDGGDPLKLWDDAKLQMLVEVQSWPYSFPESEDFLKWDQRGYVSGRLLVRERYISDDYISAKGAYVGLAPPGDLGSWQRECKNYQFWAKADDDGYFSICNIRAGDYNLYAWVPGYIGDYKYDVIMNITEGCDIDIGDLVYEPPKDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYINHPDKFRQYGLWERYAELYPDKDLIYIVGVSDYTKDWFFAQVTRKKDDNTHQGTTWQIKFQLDNVNKSSSYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPVLIQVVMDNGIVQVNLSNPEGIVIGIQYNGLDNLLEILNHESDRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEATNFTVIVENEEQVELSFTRIWNFSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFHYMVVADDRQRFMPLPDDRSPERGEVLAYPEAVRLVNPVEPEFKGEVDDKYQYSCESRHNHVHGWICIDPSESLGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMKFGPNEPWKKVYGPIFIYLNSLTNGLSPIMLWEDAKQQMVNEVESWPYTFAASEDFLTSDQRGKVEGRLLVRDRYINDAFIPVSDAYVGLVFTRDVGSWQRETKGYQFWTITDNQGHFSIINIRPGDYNLHSWVNGYIGDYQYDSILNVTSGCEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINRLYVNHADRFRQYGLWERYADLYPNEDLVYTVGISDYTKDWFFAQVNRKKDNNTYHGTTWQINFNLDYVNTNGTYKLRLALASVHSAELQIRINNSEANPPLFSTGVIGKENTIARHGIHGIYWLYSIDVQGTLLVQGNNTIFLTQASNTSPFQGILYDYIRLEGPPYINYKDQN* 1870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01657 1869 CDD RGL4_C 1074 1228 - -
Rops10g01657 1869 CDD RGL4_C 1671 1858 - -
Rops10g01657 1869 FunFam Rhamnogalacturonate lyase B 1557 1656 - -
Rops10g01657 1869 Pfam Polysaccharide lyase family 4, domain II 1585 1655 IPR029413 -
Rops10g01657 1869 Pfam Polysaccharide lyase family 4, domain II 986 1058 IPR029413 -
Rops10g01657 1869 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Rops10g01657 1869 CDD RGL4_N 14 293 - -
Rops10g01657 1869 Gene3D - 1070 1247 - -
Rops10g01657 1869 Gene3D - 438 626 - -
Rops10g01657 1869 Gene3D - 1667 1858 - -
Rops10g01657 1869 CDD RGL4_N 635 933 - -
Rops10g01657 1869 Gene3D - 634 935 IPR014718 GO:0030246
Rops10g01657 1869 Gene3D - 8 303 IPR014718 GO:0030246
Rops10g01657 1869 CDD RGL4_M 331 430 IPR029413 -
Rops10g01657 1869 CDD RGL4_M 1560 1659 IPR029413 -
Rops10g01657 1869 FunFam Rhamnogalacturonate lyase B 328 427 - -
Rops10g01657 1869 CDD RGL4_C 442 628 - -
Rops10g01657 1869 Gene3D - 352 414 - -
Rops10g01657 1869 Gene3D - 962 1054 - -
Rops10g01657 1869 Gene3D - 1557 1656 - -
Rops10g01657 1869 Pfam Polysaccharide lyase family 4, domain III 1669 1857 IPR029411 -
Rops10g01657 1869 Pfam Polysaccharide lyase family 4, domain III 1072 1237 IPR029411 -
Rops10g01657 1869 Pfam Polysaccharide lyase family 4, domain III 440 623 IPR029411 -
Rops10g01657 1869 SUPERFAMILY Starch-binding domain-like 372 411 IPR013784 GO:0030246
Rops10g01657 1869 SUPERFAMILY Starch-binding domain-like 1006 1051 IPR013784 GO:0030246
Rops10g01657 1869 Pfam Rhamnogalacturonate lyase family 1232 1427 IPR010325 -
Rops10g01657 1869 Pfam Rhamnogalacturonate lyase family 641 832 IPR010325 -
Rops10g01657 1869 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Rops10g01657 1869 SUPERFAMILY Starch-binding domain-like 1559 1656 IPR013784 GO:0030246
Rops10g01657 1869 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 624 - -
Rops10g01657 1869 SUPERFAMILY Galactose-binding domain-like 1666 1858 IPR008979 -
Rops10g01657 1869 SUPERFAMILY Galactose mutarotase-like 640 924 IPR011013 GO:0003824|GO:0005975|GO:0030246
Rops10g01657 1869 FunFam Rhamnogalacturonate lyase B 960 1059 - -
Rops10g01657 1869 SUPERFAMILY Galactose-binding domain-like 1069 1234 IPR008979 -
Rops10g01657 1869 SUPERFAMILY Galactose-binding domain-like 437 624 IPR008979 -
Rops10g01657 1869 CDD RGL4_M 963 1062 IPR029413 -
Rops10g01657 1869 CDD RGL4_N 1232 1520 - -
Rops10g01657 1869 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01657 Rops-Chr10 30465200 30491411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01657 1 622 Polysaccharide Lyase AT1G09910 71.222 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01657 K18195 - gmx:100814185 1185.24