Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01650 ATGGAGCTCTATGACCAGGATTTCTTAGAGGAATTAATGACTCTAAGAAGAGACACATGGGACACCAATCCAATTACAGAAGAAAACCAGTTCTTCTCTAATGGCTGGAGTTTTGACTGTTTTGATCAAAACTCTTTAGGTTATCTCCCAAACTCTTCTTGTGGTCAAGAAGTTCCTCAAGGTTACAATGACTACTCCTTCAATGAAATCTATGGTTCCTTACTTGATGAATCCTCTGCACCACAGATTATTGATTCATACTATAACACCCTTGAGACTCCACTTGATACCCCTCCATTTCTTGCTCAAGAAGAGTTCCCATTGTCCAACATGGAAGAAGAGGATCCAGGTTTACTTGGAGAAGAGCTTCAGAATTTGGAGCTGCAAACCACATGCAAAATGGAGCCATCCCAATCCCCTGAGATGCCAGTTTTCAACACTGGAACAGGTCTAGAAAGAAAGAATCGAGCAAAGAAGCTGCAGGGTCAACCCTCCAAGAATCTAATGGCAGAGAGGAGGAGAAGAAAGAGATTAAACGACCGTCTCTCAATGCTAAGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACATCTATACTCGGAGACACTATTGATTACATGAAGGAACTTCTGGAGAAGATCAACAATCTGCAAAAAGAAATAGAAGTAGATTCAAACATAACAGGCATTTTGAAAGATGTAAATCCAAATGAAATCTTAGTGAGAAATTCACCAAAGTTTGAGGTGGAAAGGAATGTGGACACCCGAGTCGAAATTTGCTGTGCAGGGAAACCAGGCTTGTTGCTATCCACAGTAAACACCCTTGAAGCTTTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCATGCTCAGAGGATTTGGAGCAAAGGACAATGCTAAGTTCTGAAGATATCAAGCAAGCATTATTTAGAAGTGCAGGGTATGGAGGAAGATGTTTATGA 993 0.4068 MELYDQDFLEELMTLRRDTWDTNPITEENQFFSNGWSFDCFDQNSLGYLPNSSCGQEVPQGYNDYSFNEIYGSLLDESSAPQIIDSYYNTLETPLDTPPFLAQEEFPLSNMEEEDPGLLGEELQNLELQTTCKMEPSQSPEMPVFNTGTGLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQKEIEVDSNITGILKDVNPNEILVRNSPKFEVERNVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEDLEQRTMLSSEDIKQALFRSAGYGGRCL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01650 330 Coils Coil 201 228 - -
Rops10g01650 330 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Rops10g01650 330 CDD ACT_UUR-ACR-like 256 297 - -
Rops10g01650 330 SMART finulus 168 217 IPR011598 GO:0046983
Rops10g01650 330 Gene3D - 152 226 IPR036638 GO:0046983
Rops10g01650 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Rops10g01650 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 73 325 - -
Rops10g01650 330 MobiDBLite consensus disorder prediction 133 168 - -
Rops10g01650 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01650 Rops-Chr10 30355450 30357146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01650 29 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 49.838 3.02e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g01650 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01650 - - gmx:100812578 559.296