Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01646 ATGGAAAGTGTGTGCCTCAAGAGCTTAGAATTAAAAGAACGCAATTACATGGGATTATCTGAGTGTTCTTCTGTGGACAGTTCAGTTCCATCCTTCTCAGATGAGAGCAAAAGTAATCTCAACCTGAAAGCCACAGAACTAAGGCTTGGCCTTCCAGGATCACAGTCTCCTGAAAGGGATTCTGATCTTTGCTTGAGAAGCTCGACTCAATTTGATGAAAAGCCTTTGTTTCCTTTGCGTCCTTCAACTGATGATCACCATTCCTCAGCAAAGACTGCTGTTTTGGGCAACAAAAGAGGTTTCTCAGATGCCATGAATGGCCTCTCAGAGGGGAAATTCTTAGTTAATTCGGAGGCTAATCCGATACTGTCACCCAGGCCTTCTAACATAGGATTAAAACCTGGTTCTAAGCCTGAGAATGTTGGGGCCCAACAAGCCAAAATGAAAGAAATAGCAACAACAAAGGTGGGACTTGATAAGCCTCATGCTGTCAATGAAACCAGACCAACTCTTGATGGTTCTGATAATAATAATAGCAGTGCACCAGCTACCAAGACTCAGGTTGTAGGGTGGCCTCCTATAAGATCTTTCAGGAAAAATTCATTGGCAGCTAATTCAAAGAACACCGATGAAGTTGATGGAAAAGTGGGGTCTGGTGCACTGTTCATCAAGGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACTCTAAGTCAATGTGAATCACATGGAACTCTGGGCAGGGAGATGCTGAATGAAACCAAGTTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACTTACGAGGATAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGAGTTCAGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGAGCTAG 1023 0.4282 MESVCLKSLELKERNYMGLSECSSVDSSVPSFSDESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPSTDDHHSSAKTAVLGNKRGFSDAMNGLSEGKFLVNSEANPILSPRPSNIGLKPGSKPENVGAQQAKMKEIATTKVGLDKPHAVNETRPTLDGSDNNNSSAPATKTQVVGWPPIRSFRKNSLAANSKNTDEVDGKVGSGALFIKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTLSQCESHGTLGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKSSDAIGLAPRAVEKSKSRS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01646 340 ProSiteProfiles PB1 domain profile. 220 322 IPR000270 GO:0005515
Rops10g01646 340 MobiDBLite consensus disorder prediction 169 186 - -
Rops10g01646 340 Gene3D - 215 334 - -
Rops10g01646 340 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 40 327 IPR003311 GO:0005634|GO:0006355
Rops10g01646 340 FunFam Auxin-responsive protein 215 332 - -
Rops10g01646 340 Pfam AUX/IAA family 45 331 IPR033389 -
Rops10g01646 340 SUPERFAMILY CAD & PB1 domains 218 321 - -
Rops10g01646 340 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01646 Rops-Chr10 30261156 30266717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01646 205 325 B3 DNA Binding Superfamily AT2G46530 32.231 5.28e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops10g01646 AUX_IAA 4.6e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01646 K14484 - gmx:100783314 552.747