Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01645 ATGGGAACTGGTTGGAGAAGAGCCTTTTGCACTCGCGATCCAGAATCTATCATATCGGATAAACAACACAGAAGCCCGAGTCCAAGTCCTAGCCCACGAAGCTGTGCCAGATTGGGTTTTCTGTCTGGAGGTAGCAACCCCTCCACTCCACGGTTGCAGCAGCAACAACTAGTGTCTAGTCCAAGCTTGCGTTGCAGAACAATCGCAGAAGCAGCTTCTCAAACAGCCATAGCTAATGAAAGTCCCAGACTTCAAAGCAAAAGCACCCCAAGAGCCTCCAACTCCCCCAAAACAGTCTCAACCTCAAATCCAACTTCTCCTCGCTCCCCTCTCAAGCTATCCCTCTTCAAGAACAGCTTCAAATTCAGGAGTAGCTGTGGAATCTGCTTGAACAGCGTGAAGACGGGACAGGGCACGGCCATTTATACAGCAGAATGCGGTCATGCCTTTCATTTCCCATGTATAGCTGCATATGTACGCAAGCATGGTAGCCTGGTATGCCCCGTCTGCAACGCTACCTGGAAAGATGTACCTCTACTTGCGGCCCACAAGAATCTTGGCCCAGACCCCGCTTCTCAAAACGACGTCGTTGAAAGGAGCACAGAAAAGCCCAATGCTGGTGAGAAAAAGCGAACACAAAACCTCCAAACCAACCATGTGGAGCCACCTCAGCAGCAACAACCTAAGCATTCCGATTCAGTCCGTTCCTACGATGACGACGAGCCTCTTCTTTCACCTACCTCCGGTGGACGGATAGTCCCCATTCCCGAAGCAGATGAGAATGCAGAAGATGAAGACAAAGCCGACGCCGGCGAGTTCCAGGGGTTTTTTGTCAATACGAAACCTTCATCTTCAACCAAATCATACTCTGATGACTTACAACAAACCAGCGACGGTGATTCCAGAACCGTTCAAGTGAAGTTGATGCCAGAGTGTGCTATCGTATCAGCTTCCCGAAGCTACGAGACGTACGCTTTGGTTTTAAAAGTGAAAGCTCCGCCACCGCCGAGGAGCACCACCGCGCCACTCATGGACCCTTCACAGCGCGCGCCGATAGATCTCGTTACGGTGCTTGACGTAGGTGGCAACATGACCGGCGCAAAGCTTCACATGCTAAAACGCGCGATGCGTTTGGTTATCTCCTCTCTTGGCCCCGCTGACAGGCTCTCCATCGTGGCTTTCTCTGCTACCTCCAAACGACTCTTACCTTTACGAAGAATGACCGGTCAAGGTCAACGCATGGCTCGTGGCATTGTTGACCGGCTCGTCACCGGTCAAGGCACCGGCATAGGTGATGCCTTGAGGAAAGCCACGAAGGTTCTGGAAGACCGCAGAGAGAGAAATCCGGTGGCCAGCGTTATGCTATTATCCGACGGTCAAGATGAGAGGGTTCAAAATAGTAACAAAACCAATCAACGGAAGACATGGAGCCACGTGTCTTCCACGCGGTTCGCACACCTCGAGATTCCGGTTCATGCGTTTGGCTTCGGAAGCAAAAGCGGATACAGCCACGAGCCTGGTGAGGATGCGTTTGCCAAATGCGTGGGTGGGCTTTTGAGTGTGGTGGTGCAGGACTTGAGAATACAGCTGGGCTTTCAATCTGATTCGGCCCGGGCCGAGATCAGCACCATATACTCTTGCAGTGGAAAGCCCACGCTGCTTAGCTCAGGAGCCGTCCGGCTCGGCGATTTGTACGCCGAAGAAGAGAGGGAGCTGTTAGTGGAGCTGAGAGTGCCCACGTCAGCATTAGGGATGGGGACCCACAACGTGATCACGGTACGGTGCCTTTACAAGGACCCCGCTAGCCAAGAGATAGTATACGGTAGGGAACAGGGTCTTATGGTGCCACCGCCACAAAGTGTGCGTTGTTCCGGTACCAGAATCGAGTGGCTCAGGAATCTGTTCATAACGACTCGAGCCATAGCCGAGTCAAGGAGGCTTCTCGAACACAATAGCGACTTCACCAGCGCACATCATTTGCTTGGTTCCGCTCGTGCTCTTCTCATGCAGTCAAACTCCGTTTCGGCTGAGGAGTACGTGCGAGCCTTGGAGGGAGAGCTGGCAGAGCTTCATCGGCTGAGACAGCATGAACAACAACAGGTTCAGGTTCAGCACCAGCAACAAATGATGGTGATGATGCAACGGAGAAGAGGGAGCGAGAGGGAGATGATGACTATGGTGGATGAAAATGGTGAGCCGCTCACACCAACATCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATGGCCATGATCAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2313 0.5249 MGTGWRRAFCTRDPESIISDKQHRSPSPSPSPRSCARLGFLSGGSNPSTPRLQQQQLVSSPSLRCRTIAEAASQTAIANESPRLQSKSTPRASNSPKTVSTSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAYVRKHGSLVCPVCNATWKDVPLLAAHKNLGPDPASQNDVVERSTEKPNAGEKKRTQNLQTNHVEPPQQQQPKHSDSVRSYDDDEPLLSPTSGGRIVPIPEADENAEDEDKADAGEFQGFFVNTKPSSSTKSYSDDLQQTSDGDSRTVQVKLMPECAIVSASRSYETYALVLKVKAPPPPRSTTAPLMDPSQRAPIDLVTVLDVGGNMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSATSKRLLPLRRMTGQGQRMARGIVDRLVTGQGTGIGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQNSNKTNQRKTWSHVSSTRFAHLEIPVHAFGFGSKSGYSHEPGEDAFAKCVGGLLSVVVQDLRIQLGFQSDSARAEISTIYSCSGKPTLLSSGAVRLGDLYAEEERELLVELRVPTSALGMGTHNVITVRCLYKDPASQEIVYGREQGLMVPPPQSVRCSGTRIEWLRNLFITTRAIAESRRLLEHNSDFTSAHHLLGSARALLMQSNSVSAEEYVRALEGELAELHRLRQHEQQQVQVQHQQQMMVMMQRRRGSEREMMTMVDENGEPLTPTSAWRAAEKLAKMAMIKKSLNRVSDLHGFENARF* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01645 770 Coils Coil 680 700 - -
Rops10g01645 770 MobiDBLite consensus disorder prediction 210 231 - -
Rops10g01645 770 MobiDBLite consensus disorder prediction 1 52 - -
Rops10g01645 770 SMART VWA_4 351 537 IPR002035 -
Rops10g01645 770 ProSiteProfiles VWFA domain profile. 353 498 IPR002035 -
Rops10g01645 770 MobiDBLite consensus disorder prediction 185 302 - -
Rops10g01645 770 MobiDBLite consensus disorder prediction 74 110 - -
Rops10g01645 770 SUPERFAMILY RING/U-box 120 176 - -
Rops10g01645 770 CDD vWA_C3HC4_type 352 523 - -
Rops10g01645 770 Gene3D von Willebrand factor, type A domain 353 517 IPR036465 -
Rops10g01645 770 Pfam Ring finger domain 125 171 IPR001841 -
Rops10g01645 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 238 IPR013083 -
Rops10g01645 770 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 124 765 - -
Rops10g01645 770 FunFam Probable E3 ubiquitin-protein ligase EDA40 353 518 - -
Rops10g01645 770 CDD RING-H2_WAVH2 123 176 - -
Rops10g01645 770 ProSiteProfiles Zinc finger RING-type profile. 126 171 IPR001841 -
Rops10g01645 770 Pfam von Willebrand factor type A domain 353 497 IPR002035 -
Rops10g01645 770 SMART ring_2 126 170 IPR001841 -
Rops10g01645 770 MobiDBLite consensus disorder prediction 277 302 - -
Rops10g01645 770 SUPERFAMILY vWA-like 351 526 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01645 Rops-Chr10 30219152 30222412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01645 126 176 C3H Transcription Factor Family AT1G74410 41.176 2.95e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01645 - - lja:Lj3g3v3131860.1 1134.01