LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01632	ATGGTCTTTGTTATTGGACTTGTTGTTTCAATGACTAGTGTGTCAGGGGTTATCAGCAGTAGCAGCAACCAGTCTGAGTTTTTTTCTCTGATGAAGGAGTCTCTCTCAGGGAATTATCCACTGAATTGGGATGTTACAATTGGGAAACCCGTTTGCAACTTCACTGGAGTTACCTGCAACAACAAAGGAGATGTTATCAATCTTGACCTTTCAGGTTGGTCACTTTCTGGGAAGTTCCCATCAGATATATGCTCTTATTTGTCAGAGTTGCGTGCTCTACGCCTTGCACTCACGAGGTTCAAGTTTCCTATAGACAGCATACTCAACTGTTCTCACTTGGAAGAGCTTAACATGACTTATATGTATCAAACTGGCACACTTCCAGATTTCTCTTCTATGAAATCTCTTAGGATACTTGATTTGTCCTACAACCTTTTCACTGGTGAATTTCCCATGTCAGTTTTTAACCTTACAAATCTAGAGACGCTGAACTTCAATGAAAATGGAGGTTTCGGTCTGTGGAAGCTACCATTGAATATTGACAGGCTGCAAAATCTGAAGTCCATGGTGTTGACAACATGCATGTTGCATGGCCAAATCCCATCATCCATAGGAAACATCACTTCTCTTGTTGATCTTGAATTGAGTGGGAATTTCCTCTCAGGCCAAATTCCTCCAGAGCTTGGTTTGCTCAAAAACTTGCAACAGCTTGAGCTTTACTATAACCAACATCTTGTTGGTAATATACCTGAGGAGCTAGGAAATCTCACAGAGCTCAGAGATTTGGATATGTCAGTGAACAAGTTGACAGGGAGTATCCCAGTATCCATATGGAGCCTTCCAAAGCTTCAAGTCTTTCAACTTTACAACAATAGCCTCTCAGGAGAAATCCCAGGTGTGATTGAAAACTCAACAACCTTAAGAATGCTATCTCTTTATGACAATTTTTTCAGAGGACATGTCCCCAGGAAACTGGGACAGTTCTCAAGAATGATAGTCCTAGACTTGTCAGAAAACAGTCTATCTGGTCCTTTGCCAACAGAAGTTTGTAAAGGAGGTACACTACAGTACTTTCTTGTTTTGGATAACAAGTTTTCTGGAGAGATACCAGAGAGTTATGCAAACTGCATGATGTTGTTGAGGTTTAGAGTTAGTAATAACCGTTTGGAGGGTTCAATTCCGGAGGGACTACTTGGTCTACCTCATGTTTCAATCATTGATTTGAGTAGCAATAATTTGACTGGTCCAATTCCCGAGATAAATGGTAATTCTAGAAACTTGTCTGAACTGTTCCTACAAAGGAACAAGATTTCAGGAGTCATAACTCCTACAATCTCTCGAGCCATTAACCTTGTCAAGATTGACTTCAGCTATAACCTTCTTTCTGGTCCAATCCCTTCAGAAATTGGCAACCTGAGAAGGCTTAATTTGCTTATGTTACAAGGAAACAAGTTGAGTTCTTCCATCCCCAGTTCACTTTCCTCCTTGGGATCCCTCAACCTTCTTGATCTCTCCAACAACCTTTTAACTGGGATCATCCCTGAAAGCCTCTCTGTACTGTTACCAAACTCCATTAACTTCTCACACAATTTGCTTTCTGGTCCAATTCCTCCCAAGTTGATCAAGGGAGGTTTGGTTGAAAGCTTTGCAGGTAATCCAGGTCTGTGTGTGCTCCCAGTATATGCTAACTCATCAGATCGAAACTTCCCCATATGTTCACATGCCTACAACAAGAGTAAGAGGATAAACACCATCTGGGTAGCTGGGATATCAGTGGTTTTAATCTTTATTGGAGCTGTCTTGTTTCTTAAACGTAGATGCTGTAAAGAGACAGCTGCAGTGGAGCATGAGGACACACTATCTTCTTCATTCTTTTCTTATGATGTTAAGAGCTTTCACAAGATCACTTTCGACCAAAGGGAGATCCTTGAATCCTTGGTGGATAAGAATATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTTGCAGTTAAGAGGCTGTGGAGTAGTAAATCAAAGGATTATCCAGAGGATCGATTATTTATGGACAAGGCATTGAAAGCAGAGGTTGAGACCCTGGGAAGTATAAGACACAAGAACATAGTCAAACTATACTGCTGCTTCTCAAGTTTGGATTGCAGCTTGTTGGTGTATGAGTACATGCCAAATGGTACTTTATGGGATTCACTTCACAAAGGTTGGATCCATTTGGATTGGCCTACTCGCTATAGGATTGCACTGGGGATTGCCCAGGGTCTTGCATACCTTCACCATGATTTGGTTTTTCCTATTATCCATCGAGATATCAAATCAACTAATATCCTTTTGGATGTTGATTACCATCCCAAAGTTGCAGACTTTGGGATAGCCAAGGTTTTGCAAGCAAGAGGGGGGAAGGATTCCACAACAACTGTTATTGCAGGAACATATGGTTACTTAGCCCCAGAATATGCATATTCAGCAAGGGCCACCACCAAGTGTGATGTTTACAGTTTTGGGGTGATTTTGATGGAACTGTTAACAGGGAAAAAACCCGTTGAGGCAGAATTTGGAGAGAACAGAAATATTGTCTTCTGGGTTTCAAACAAAGTAGAGGGCAAGGAAGGTGCTAGACCAAGTGAGGTATTTGATCCTACATTATCATGTTCATTCAAGGATGACATGATTAAAGTGTTGCGGATTGCCATTCGTTGCACCTACAAAGCACCAGCTAGTAGACCAACAATGAAAGAGGTTGTTCAGCTTTTGATTGAGGCAGAGCCACGCTCTTCTGATTCTTGCAAGTTGTCAACCAAAGATACATCAAATGTCACCATAATAAAGAAACCTTTTGAATTATAA	2868	0.4114	MVFVIGLVVSMTSVSGVISSSSNQSEFFSLMKESLSGNYPLNWDVTIGKPVCNFTGVTCNNKGDVINLDLSGWSLSGKFPSDICSYLSELRALRLALTRFKFPIDSILNCSHLEELNMTYMYQTGTLPDFSSMKSLRILDLSYNLFTGEFPMSVFNLTNLETLNFNENGGFGLWKLPLNIDRLQNLKSMVLTTCMLHGQIPSSIGNITSLVDLELSGNFLSGQIPPELGLLKNLQQLELYYNQHLVGNIPEELGNLTELRDLDMSVNKLTGSIPVSIWSLPKLQVFQLYNNSLSGEIPGVIENSTTLRMLSLYDNFFRGHVPRKLGQFSRMIVLDLSENSLSGPLPTEVCKGGTLQYFLVLDNKFSGEIPESYANCMMLLRFRVSNNRLEGSIPEGLLGLPHVSIIDLSSNNLTGPIPEINGNSRNLSELFLQRNKISGVITPTISRAINLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLSSSIPSSLSSLGSLNLLDLSNNLLTGIIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDRNFPICSHAYNKSKRINTIWVAGISVVLIFIGAVLFLKRRCCKETAAVEHEDTLSSSFFSYDVKSFHKITFDQREILESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSSKSKDYPEDRLFMDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGTLWDSLHKGWIHLDWPTRYRIALGIAQGLAYLHHDLVFPIIHRDIKSTNILLDVDYHPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYAYSARATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPTLSCSFKDDMIKVLRIAIRCTYKAPASRPTMKEVVQLLIEAEPRSSDSCKLSTKDTSNVTIIKKPFEL*	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01632	955	Gene3D	Phosphorylase Kinase; domain 1	629	729	-	-
	Rops10g01632	955	SUPERFAMILY	Protein kinase-like (PK-like)	633	925	IPR011009	-
	Rops10g01632	955	Gene3D	Ribonuclease Inhibitor	172	275	IPR032675	-
	Rops10g01632	955	FunFam	receptor protein-tyrosine kinase CEPR1	629	729	-	-
	Rops10g01632	955	Pfam	Protein kinase domain	648	923	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01632	955	FunFam	LRR receptor-like serine/threonine-protein kinase RCH1	730	943	-	-
	Rops10g01632	955	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	773	785	IPR008271	GO:0004672\|GO:0006468
	Rops10g01632	955	Gene3D	Ribonuclease Inhibitor	24	171	IPR032675	-
	Rops10g01632	955	SUPERFAMILY	L domain-like	375	565	-	-
	Rops10g01632	955	Gene3D	Transferase(Phosphotransferase) domain 1	730	950	-	-
	Rops10g01632	955	FunFam	Leucine-rich repeat receptor-like protein kinase	173	276	-	-
	Rops10g01632	955	FunFam	Receptor protein-tyrosine kinase CEPR1	280	566	-	-
	Rops10g01632	955	PANTHER	RECEPTOR-LIKE PROTEIN 55	286	925	-	-
	Rops10g01632	955	Gene3D	Ribonuclease Inhibitor	287	566	IPR032675	-
	Rops10g01632	955	ProSiteProfiles	Protein kinase domain profile.	646	932	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01632	955	SUPERFAMILY	L domain-like	179	417	-	-
	Rops10g01632	955	SMART	serkin_6	646	932	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01632	955	SUPERFAMILY	L domain-like	46	242	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01632	Rops-Chr10	29950328	29953920	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01632	20	931	Receptor kinase-like Gene Family	AT5G49660	65.251	0.0	1195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Rops10g01632		Pkinase	1.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01632	-		-	lja:Lj1g3v2096140.1	1592.02