Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01603 ATGTGGCTCAATAGGCATAGGCTCAACTACTTCTTCTATATTCTCGCACCAACCACTAAGTTTGTAAAGAGACTAATAGTGGTGTTAGGTGGGGTAGCTCGCGGAGAAGAGAAGGGTGAGAGAAAGTTGTTGGCAGTGATGTCGAGCACATTGAAGGAGATAAGGAACGGAGTTACAGAGGATTACTTGAACGGTGAGGGTGGTGGTGGTGTGAGAGACTTGTATGGTGAGGATAGTGCCACAGAGGATCAGCTTATCACCCCATGGTCTTTCTCAGTGGCCAGTGGCTCCACTTTGCTGAGAGATCCACGCTACAACAAAGGACTGGCCTTCACTGAGAAAGAAAGAGATGCTCATTACTTGCGTGGCCTTTTGCCTCCAGCTGTCTTCACCCAGGATCTTCAGGAAAAGAGGATGATGCACAATCTTCGCCAGTATGAGGTTCCTTTGCATAGGTACACGGCCTTGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTCTGATTGATAATGTTGAGGAACTGCTTCCTATTGTTTACACTCCAACAGTTGGAGAAGCCTGCCAGAAATATGGAAGCATTTTTAGGCGTCCACAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAGGTACTGAAAAACTGGCCAGAAAAGACTGTTCAGGTTATTGTTGTGACTGATGGTGAACGTATATTGGGACTTGGAGATCTTGGTTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCATCATGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTATATTGGACTTAGACAAAAGCGGGCAACTGGGAAGGAATATGAGGAGCTTCTAGATGAGTTTATGCGTGCAGTTAAGCAGAACTATGGGGAGAAAATTGTTATACAGTTTGAAGATTTCGCAAATCATAATGCATTTAATCTGCTGGAAAAATACAGCTCATCTCATCTTGTTTTTAATGATGATATACAGGGTACAGCATCTGTAGTATTAGCAGGATTGCTTGCTTCCCTGAAATTAGTAGGGGGAACCTTAGCTGACCATACTTTCTTATTCCTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTTGAAAAGACCCGTAAGAAGATCTGGCTGGTGGACTCTAAGGGACTTATTGTTAGCTCTCGTCTGGAATCACTTCAGCACTTCAAAAAGCCTTGGGCCCACGAGCATGAACCTGTAAAGGGGCTTCTAGATGCTGTCAAGGCAATCAAGCCAAGTGTACTGATTGGATCATCTGGAGTGGGGAAGACATTTACCAAGGAGGTGGTTGAAGCCATGGCATCCTTGAATGAGAAACCTCTCATTCTTGCTCTCTCCAATCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTCCCTGGTTTTGGTTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCTCAAGTATCACAGGAGAACTATGATAAGGGACTGATTTACCCTCCATTCTCAAATATCAGAAAGATATCAGCTCAAATTGCTGCTAATGTTGCAGCTAAGGCATACGAACTTGGTCTGGCTTCTCATCTACCTCGACCTAAGGATCTAGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACCGCAGCTATCGTTAA 1908 0.4455 MWLNRHRLNYFFYILAPTTKFVKRLIVVLGGVARGEEKGERKLLAVMSSTLKEIRNGVTEDYLNGEGGGGVRDLYGEDSATEDQLITPWSFSVASGSTLLRDPRYNKGLAFTEKERDAHYLRGLLPPAVFTQDLQEKRMMHNLRQYEVPLHRYTALMDLQERNERLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTVQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYEELLDEFMRAVKQNYGEKIVIQFEDFANHNAFNLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEKTRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPSVLIGSSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFSNIRKISAQIAANVAAKAYELGLASHLPRPKDLVKYAESCMYSPGYRSYR* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01603 635 PRINTS Malic enzyme signature 322 340 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 PRINTS Malic enzyme signature 481 497 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 PRINTS Malic enzyme signature 378 394 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 PRINTS Malic enzyme signature 347 363 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 PRINTS Malic enzyme signature 226 255 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 PRINTS Malic enzyme signature 166 190 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 PRINTS Malic enzyme signature 262 284 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 SMART Malic_M_2 351 604 IPR012302 GO:0051287
Rops10g01603 635 FunFam Malic enzyme 94 348 - -
Rops10g01603 635 Pfam Malic enzyme, N-terminal domain 160 340 IPR012301 GO:0004471
Rops10g01603 635 PANTHER MALIC ENZYME-RELATED 71 635 - -
Rops10g01603 635 PIRSF ME 61 635 IPR001891 GO:0004470|GO:0004471
Rops10g01603 635 CDD NAD_bind_1_malic_enz 351 629 - -
Rops10g01603 635 FunFam Malic enzyme 349 635 - -
Rops10g01603 635 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 78 350 IPR046346 -
Rops10g01603 635 ProSitePatterns Malic enzymes signature. 347 363 IPR015884 GO:0004471
Rops10g01603 635 SMART malic_2 160 341 IPR012301 GO:0004471
Rops10g01603 635 Gene3D - 94 348 IPR037062 GO:0004471
Rops10g01603 635 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 351 634 IPR036291 -
Rops10g01603 635 Pfam Malic enzyme, NAD binding domain 351 603 IPR012302 GO:0051287
Rops10g01603 635 Gene3D - 349 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01603 Rops-Chr10 29586920 29592143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01603 K00029 - gmx:100801564 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01603 10 29586920 29592143 Rops10g01603 10 29586920 29592143 ECH
Rops10g01603 10 29586920 29592143 Rops4g02108 4 47511521 47516886 ECH
Rops10g01603 10 29586920 29592143 Rops7g00272 7 3508918 3514630 ECH
Rops2g00326 2 4901488 4906262 Rops10g01603 10 29586920 29592143 ECH
Rops4g02108 4 47511521 47516886 Rops10g01603 10 29586920 29592143 ECH
Rops7g00272 7 3508918 3514630 Rops10g01603 10 29586920 29592143 ECH