Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01600 ATGCCTGAGCTGCGTACCAGAGCATGCAGAAACCGCCACGTTGATAACGCTAACTCGAATCCGATCACCGACTCACCGGAGGCCGCCGGAGTCCGACCGAGGAGGAGAACCGCCGCTGTTGCTCCGACCAGGAGGAATCGGAGGCAGAAGAACGCGATCGTCGCCGATGATATAGTGAAAAACGACGACGCCGGAGCCGTTCGTGAAGAAGAACAACGAGAGAGGAAGAAGAAGAAGACGACGCCGGTTAGGGTTTTGGGGAAGGAAGCCATGGATGAGTACGATAGTGGTGGCCGTAGTGCCGATAAGGCTCCGGGAGCAGAAGACGAGGGTAGCACAGCACCTCTTCCTGAGAAGGTCCAGGTTGGTGGTTCCCCGTTATATAGAATCGAAAAAAAACTTGGGAAGGGAGGATTTGGACAAGTCTATGTTGGTCGGCGTGTAGGAGCTGGTTCTGGTGCTATTGAGGTAGCCTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCATTAGGTGGTAGTCATGGTGTGCCACGTGTTCATTACAAGGGACGGCAAGGTGACTACTATATTATGGTGATGGATATGCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACAAACGATGTCTACTGAAATGGTGGCATGCATTGCAATTGAAGCTATCTCTATATTAGAGAAGATGCATTCCAGAGGATATGTGCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGGCCCCCAGGAACTCCTGACGAGAAGAAGTTGTTTTTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGATAGTTCAACTGGCCTTCATGTTGACTATGATCAACGTCCAGATGTATTTAGGGGCACAGTTCGTTATGCCAGTGTGCATGCTCACCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCGCTTGCTTACACTCTTGTCTTCCTTCTTCGTGGTCGGCTCCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAACTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCTGTTTGTTGAATATGTAGTGAATTTGAAGTTCGACGAAGAACCAAATTATGCAAAATATATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCAGATATCAGGCCAATAAATACTGACGGTGCTCAGAAGCTTATATGTCAGGTTGGACATAAGAGAGGGCGATTGACCATCGAAGAGGATGATGATGAACAACCAAAGAAGAAGATCCGAATGGGAATGCCAGCAACGCAATGGATTAGTGTTTACAATGCTCGTCGACCTATGAAGCAAAGGTATCATTACAATGTGGCTGATGTGCGGCTGTCCCAACATATTGAGAAAGGAAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGGACAAGTTTATGAACTCTCTTCGTACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGAGCTAATAATGGGTGCTCATTGGTTGTAATGTCTAAAGGGACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCATTTCCATTCAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGCACCAGATGGGCTATTGTTATGTCCCGTGGTGCAGGATTTTCAGACCAGGTTGTGGAACTTGACTTCCTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAGCGGTTACCGCATTACCTCAACTGCTGCAACATGGGATCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAAGAGACACTCCGCACATCTGCTTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTTTCATAA 2067 0.4582 MPELRTRACRNRHVDNANSNPITDSPEAAGVRPRRRTAAVAPTRRNRRQKNAIVADDIVKNDDAGAVREEEQRERKKKKTTPVRVLGKEAMDEYDSGGRSADKAPGAEDEGSTAPLPEKVQVGGSPLYRIEKKLGKGGFGQVYVGRRVGAGSGAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSQTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRLFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLICQVGHKRGRLTIEEDDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTGQVYELSSYFLHKEWIMEQWEKNYYISAIAGANNGCSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01600 688 SUPERFAMILY Protein kinase-like (PK-like) 128 403 IPR011009 -
Rops10g01600 688 Gene3D Transferase(Phosphotransferase) domain 1 99 439 - -
Rops10g01600 688 SMART serkin_6 128 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01600 688 PANTHER CASEIN KINASE-RELATED 119 654 - -
Rops10g01600 688 CDD STKc_CK1 128 397 - -
Rops10g01600 688 ProSitePatterns Protein kinases ATP-binding region signature. 134 160 IPR017441 GO:0005524
Rops10g01600 688 Pfam Protein kinase domain 128 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01600 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Rops10g01600 688 FunFam casein kinase 1-like protein HD16 101 444 - -
Rops10g01600 688 MobiDBLite consensus disorder prediction 1 122 - -
Rops10g01600 688 MobiDBLite consensus disorder prediction 49 106 - -
Rops10g01600 688 ProSiteProfiles Protein kinase domain profile. 128 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01600 Rops-Chr10 29559578 29565169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01600 127 397 MAP Kinase Kinase Kinase AT5G50180 23.944 1.31e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Rops10g01600 Pkinase 6.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01600 - - gmx:100779382 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01600 10 29559578 29565169 Rops10g01600 10 29559578 29565169 ECH