Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01595 ATGGCCAAAGGAGCTCCAACATCTTCAAAGTCCCTCACGTTTATTTGCCTCTTCATGTTCATGCTCAACTTCCACTCATCCCATGGAGAAGAGCTTGAGCTTCTGTTATCCTTCAAAGCTTCCATCCACGACCCTCTTCATGTTATCTCCAACTGGGTCAATTCCTCTACCACTATCTGCAAGTGGCATGGCATCACCTGTGACAACTCTTCCCACGTTAACTCAGTGGCACTCTCAGGTATAAACATCACTGGGGGGATTTCCTCTTCCATATTTCAACTACCATACATTACAAACCTCGACCTTTCCAACAATCAGTTTGTTGGGGAAATCACTCTTAACTCTCCTTCTCTCTCTTCACTCCTTTACCTCAATCTTAGCAACAACAACCTCACAGGTTCTTTACCTCAATCCTTGTTTTCCGCGTCTTTTTTTAACCTCGAAACCTTGGATCTCTCGAACAACATGTTTTCCGGGAAAATACCTGACCAAATTGGATTGCTTTCCAACCTGAAGTATATTGATCTTGGAGGAAATGTTTTAGTGGGAAAGATTCCAAATTCCATTGCCAACGTGACAACTTTAGAGTACCTTACGTTGGCTTCAAACCAGTTGGTGGGTGAAATTCCCTCAGAGATAGGCCTAATGAAAAACTTGAAGTTGATTTACTTGGGATACAACAATCTTTCAGGTGAGATACCAAGAAGCATTGGAGAGTTATTTTCTTTGAATCACCTCGATCTTGTTTACAACAATCTCACGGGACCAATTCCACTATCTCTTGGAAAACTCACTGCTCTTCAATATCTCTTTCTCTACCAAAACAAGCTCACAGGTCCAATTCCCCCATCCATTTTTGAACTTAAAAAGCTTATTTCACTCGATCTCAGCGATAATTCTCTTTCGGGTGAGATTTCTGAGTTTGTGGTCCAGCTTCAGAGACTGGAAATTCTTCACCTTTTCTCAAACAACTTCACTGGAAAGATTCCAAACGCTGTGGCATCTTTGCCTCGCCTTCAGGTTCTTCAACTTTGGTCAAACAACTTGATTGGTGAGATTCCAGAAGAGCTAGGAAAGCATAGCAACCTCACAGTTCTTGACCTCTCTTCCAATAAACTCACAGGGAAGATCCCAGATAGCTTATGTGGCAGGAACAATCTTTACAAGCTCATTCTCTTCTCCAACTCTTTCAGTGGAAAAATTCCACATAGCTTAAGCTCTTGCAGAAGCTTACGCCGAGTTCGCCTCCAAAACAATAAGCTATCTGGTGAATTGCCATCAGAAATGACTCAACTGCCTCAGATATACTTCTTGGATATCTCTGGCAATGAACTTTCTGGAAGGATTGATGATAGGAAGTGGGATATGCCTGCGCTTCAAATGCTTAGTTTGGCTAACAACAACTTCTCTGGGGAGATACCAAACTCTTTTTGGAGTAACAAACTTGAGGACTTGGACTTATCAGAGAATCAATTTTCAGGTTATATTCCACCTAGTTTCCGAAACTTATCAGAACTAGTGCAATTGAAGCTTAGCAATAACAACCTGTTTGGTAATATCCCTGAAGAACTGTGTGAATGCAAGAAGCTTGTCGCTTTAGACCTCAGCCACAACCAACTCACCGGTCAGATTCCGATCAAACTCGCCGACATGCCGGTTCTCGGCATGCTTGACTTGTCGGAAAATCAACTTTCCGGTGAAATTCCACAGAATTTAGGAAGTGTCGAATCTCTTGTTCAGGTAAACATATCACGCAACCATTTTCATGGAAGTTTACCCTCCACCGGAGCTTTCCTCTCCATCAACGCAAGTTCAGTCACCGGCAACAACCTCTGTGAACGTGACGGCGATGGTTCTCCTTCAAGCGGTTTGCCACCGTGCAAAACCAATCAGAATCCAACTTGGCCCTTCATTCTACTTGGGTCTGTTGCGTTCTCAGCAGCTGTTTTTCTCATCTTTTTCTTGCATAGAAGAAAGAATAATATGGAACTCCGAAAAGTGGAAAACGAAGATGGCACCTGGGAGATGCAGTTTTTCGACTCCAAAACCTCAAAACTGATCAACGTTGAAGATGTTTTATCTTCTACTAAAGAAGGAAATTGGGTTTCATACGAAGGAAAATGCATGGTCAATGACATGCAATTCGTGGTGAAAGAAATCGGTGATCCAAATTCTCTTCCGGTGAGTTTTTGGGAAGAGACAGTAAAACTTGGCAAGCTCCGGCACCCAAACATCATCAAACTCATTGCCACGTGCAGGTCTGGAAAGAGAGGGTACTTGGTGTATGAGTATGAAGATGGAAAGAACTTGAGCCAAATTCTAAACACTTTGAGCTGGCAACGGCGACGGAAAATTGCCGTAGGGATTGCAAAAGCACTTAAGTTCTTGCACTCTCAAACTTCATCGATAGTTTTGGTTGGTGACGTGTCACCGGAGATGGTTTGGGTCAACGGAAAAGGTGTCCCTCGCCTGAAACTCAACCCTCCACGAATGGATGTCAAACCCTACGTTGCCCAAGAGATATATGGGTTTGGGGTTATGTTGATTGAATTATTGACGGGAAGAAGAGCTATGGACACAGAAGCGGGGCATGGCCTGCACAAGAACATAGTAGAGTGGGCCCGTTACTGCTACTCTGATTGTCATCTTGACACGTGGATTGACCCTGTGATGAAGGGTGGAGATGCATTGAACTATCACAACGACATCGTTGAGACCATGAATCTTGCACTACACTGTACCGCTTCTGATCCCACAGTAAGGCCATGCGCAAGAGACGTACTCAAAGCCCTAGAGACCAATATACCCACTTTTTGCTGA 2820 0.4358 MAKGAPTSSKSLTFICLFMFMLNFHSSHGEELELLLSFKASIHDPLHVISNWVNSSTTICKWHGITCDNSSHVNSVALSGINITGGISSSIFQLPYITNLDLSNNQFVGEITLNSPSLSSLLYLNLSNNNLTGSLPQSLFSASFFNLETLDLSNNMFSGKIPDQIGLLSNLKYIDLGGNVLVGKIPNSIANVTTLEYLTLASNQLVGEIPSEIGLMKNLKLIYLGYNNLSGEIPRSIGELFSLNHLDLVYNNLTGPIPLSLGKLTALQYLFLYQNKLTGPIPPSIFELKKLISLDLSDNSLSGEISEFVVQLQRLEILHLFSNNFTGKIPNAVASLPRLQVLQLWSNNLIGEIPEELGKHSNLTVLDLSSNKLTGKIPDSLCGRNNLYKLILFSNSFSGKIPHSLSSCRSLRRVRLQNNKLSGELPSEMTQLPQIYFLDISGNELSGRIDDRKWDMPALQMLSLANNNFSGEIPNSFWSNKLEDLDLSENQFSGYIPPSFRNLSELVQLKLSNNNLFGNIPEELCECKKLVALDLSHNQLTGQIPIKLADMPVLGMLDLSENQLSGEIPQNLGSVESLVQVNISRNHFHGSLPSTGAFLSINASSVTGNNLCERDGDGSPSSGLPPCKTNQNPTWPFILLGSVAFSAAVFLIFFLHRRKNNMELRKVENEDGTWEMQFFDSKTSKLINVEDVLSSTKEGNWVSYEGKCMVNDMQFVVKEIGDPNSLPVSFWEETVKLGKLRHPNIIKLIATCRSGKRGYLVYEYEDGKNLSQILNTLSWQRRRKIAVGIAKALKFLHSQTSSIVLVGDVSPEMVWVNGKGVPRLKLNPPRMDVKPYVAQEIYGFGVMLIELLTGRRAMDTEAGHGLHKNIVEWARYCYSDCHLDTWIDPVMKGGDALNYHNDIVETMNLALHCTASDPTVRPCARDVLKALETNIPTFC* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01595 939 SUPERFAMILY L domain-like 143 375 - -
Rops10g01595 939 Gene3D Ribonuclease Inhibitor 30 183 IPR032675 -
Rops10g01595 939 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 145 234 - -
Rops10g01595 939 Gene3D Ribonuclease Inhibitor 282 382 IPR032675 -
Rops10g01595 939 ProSiteProfiles Leucine-rich repeat profile. 362 384 IPR001611 GO:0005515
Rops10g01595 939 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Rops10g01595 939 SUPERFAMILY Protein kinase-like (PK-like) 704 933 IPR011009 -
Rops10g01595 939 ProSiteProfiles Leucine-rich repeat profile. 146 168 IPR001611 GO:0005515
Rops10g01595 939 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Rops10g01595 939 SMART LRR_typ_2 551 575 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 503 527 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 336 360 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 144 168 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 361 384 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 216 240 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 264 288 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 456 480 IPR003591 -
Rops10g01595 939 SMART LRR_typ_2 118 142 IPR003591 -
Rops10g01595 939 ProSiteProfiles Protein kinase domain profile. 687 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01595 939 Gene3D Transferase(Phosphotransferase) domain 1 682 825 - -
Rops10g01595 939 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Rops10g01595 939 Pfam Leucine rich repeat 337 396 IPR001611 GO:0005515
Rops10g01595 939 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Rops10g01595 939 FunFam Leucine-rich repeat receptor-like kinase 30 144 - -
Rops10g01595 939 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515
Rops10g01595 939 Pfam Protein kinase domain 711 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01595 939 SUPERFAMILY L domain-like 336 593 - -
Rops10g01595 939 SMART LRR_sd22_2 216 242 - -
Rops10g01595 939 SMART LRR_sd22_2 264 296 - -
Rops10g01595 939 SMART LRR_sd22_2 479 505 - -
Rops10g01595 939 SMART LRR_sd22_2 360 386 - -
Rops10g01595 939 SMART LRR_sd22_2 168 194 - -
Rops10g01595 939 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 320 623 - -
Rops10g01595 939 FunFam Leucine-rich repeat receptor protein kinase EMS1 235 319 - -
Rops10g01595 939 Gene3D Transferase(Phosphotransferase) domain 1 831 937 - -
Rops10g01595 939 PANTHER UNNAMED PRODUCT 116 859 - -
Rops10g01595 939 SUPERFAMILY L domain-like 30 179 - -
Rops10g01595 939 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 660 764 - -
Rops10g01595 939 Gene3D Ribonuclease Inhibitor 384 620 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01595 Rops-Chr10 29483050 29487088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01595 17 932 Receptor kinase-like Gene Family AT2G25790 53.109 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Rops10g01595 Pkinase 2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01595 - - gmx:100777118 1424.84