Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01594 ATGATGGCGGTGAGTTCAGCCTGCAAAGATGGGAGCAAGGTGGCAATGGATAACGGTAAGTACGTTAGGTACACACCAGAGCAAGTGGAAGCACTTGAGAGGTTCTACCATGAATGCCCCAAACCAAGTTCCCTGCGTCGCCAACAACTCATCAGAGAGTGTCCCATTCTCTCCAATATCGAGCCTAAACAGATCAAGGTTTGGTTCCAGAACAGAAGGTGTAGAGAGAAGCAGCGGAAAGAAGCGTCAAGGCTGCAAGCTGTGAATAGGAAGCTCACAGCAATGAATAAACTATTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTGTATGAGAACAGCTTTTTCCGCCAACAGACACATAATCAGGCGACCCTTGCCACCACCGATACAAGCTGTGAGTCGGTGGTAACCAGCGGTCAGCGCCACTTGACACCTCAGCATCCACCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCTGCACGTGCATGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCCTTCATGGTATCGTGATTGCCGAACTGTGGATGTTCTAAATGTGATGTCCACTGGAAATGGGGGAACCGTCGAACTGGTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCAGGACGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGACGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTACTATGCCCCCAGTGCCGCATTTTGTTAGAGCTGATATGCTGCCAAGCGGGTATCTGATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCACATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTACGTCCACTTTATGAGTCATCAATGCTGCTTGCTCAGAGGACAACTATGGCAGCTTTGCGACATTTGAGGCAAATTTCTCAAGAAATTTCTCAGCCAAGTGTCACAGGATGGGGAAGAAGACCTGCAGCTCTACGTGCGCTTGGTCAGCGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGAAGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTTACCCTTCTTGTGAATTCATCACCTAGCAAGATGATGGGAGTAAATATTGGCTATAACAATGGATTTCCATCTGTGAGCAGTTCTGTACTATGTGCCAAAGCATCCATGTTGTTGCAGAATGTCCCTCCAGCTATTCTTCTTAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCCTGTAGCTTGCCTGGGGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATACCTGGTGATATTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCAGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACTGATGCTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGAAGTTGGAACAACAGGAAGCAAAGCAGCTGGTGAAAATTCAGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAACTATGGCCCGACAGTATGTCCGTAGCATTATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCTCGTTTTGGTTCTCACAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGTTGGATCAGTAACAGCTATAGGTTCTATCTTGGGGTAGAATTACTGAAGTGTGAAGGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCCGGACTTGACATGCTTGAAACAACCTTGGTTGCACTTCAAGACATCACCCTGGAGAAAATACTTGATGACAATGGAAAGAAAACCCTATGTTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTACCTGTTTGTCCAGCATGGGGAGGCCAGTAGCTTATGAGAGAGCAGTAGCATGGAAAGTATTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2523 0.4661 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERFYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTHNQATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRPSWYRDCRTVDVLNVMSTGNGGTVELVYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPTMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEISQPSVTGWGRRPAALRALGQRLSKGFNEAVNGFAEDGWSMLESDGIDDVTLLVNSSPSKMMGVNIGYNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDIFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSGTDAASPNRTLDLASALEVGTTGSKAAGENSGHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWISNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKILDDNGKKTLCSEFPQIMQQGFMCIQGGTCLSSMGRPVAYERAVAWKVLNEEESAHCICFMFINWSFV* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01594 840 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Rops10g01594 840 CDD bZIP 72 111 - -
Rops10g01594 840 Coils Coil 75 116 - -
Rops10g01594 840 ProSiteProfiles START domain profile. 155 357 IPR002913 GO:0008289
Rops10g01594 840 Gene3D - 199 380 IPR023393 -
Rops10g01594 840 SMART HOX_1 17 83 IPR001356 GO:0003677
Rops10g01594 840 Gene3D - 11 86 - -
Rops10g01594 840 SMART START_1 164 374 IPR002913 GO:0008289
Rops10g01594 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 840 IPR044830 GO:0003700
Rops10g01594 840 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Rops10g01594 840 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Rops10g01594 840 Pfam MEKHLA domain 699 839 IPR013978 -
Rops10g01594 840 SUPERFAMILY Bet v1-like 164 375 - -
Rops10g01594 840 Pfam START domain 165 373 IPR002913 GO:0008289
Rops10g01594 840 CDD START_ArGLABRA2_like 159 374 - -
Rops10g01594 840 CDD homeodomain 20 80 IPR001356 GO:0003677
Rops10g01594 840 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01594 Rops-Chr10 29453004 29459520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01594 16 840 Homeobox Transcription Factor Family AT4G32880 80.964 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops10g01594 START 4.5e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01594 K09338 - gmx:100815727 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01594 10 29453004 29459520 Rops10g01594 10 29453004 29459520 ECH