Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01592 ATGGAAGCACATGAGTTTTTCCAAACCAGCTTCTGCCCACAATTCCCCTCCGACAACACCACACCCACCAACGTCAACACCACTTCAGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCCAACGATGATGCTGCCATTACCGACACCACCTTTGACTCTCTTCCCGCCAACTCCACGGATGATTCTCCCCCTTTTGACAGCACCTCCAATTCCAATTTCCTTGCCGACATTTCCTGCAGGAATTCCACCGACGGCAATTTCTCCAGTGACCTCTCCGTTCCGTATGATGATCTTGCGGAACTGGAATGGCTTTCCAAATTTGCTGAGGAATCATTTTCGAGTGAGGACTTGCAAAAGCTGCAGCTAATATCTGGCATGAAAGCGCCAAACGACGCCGCTTCACAGGCCCGTGAACCCAGCCCGATATTCAACCCACAAGTGTCGGTTCCGGCAAAGGCCCGCAGTAAACGGTCACGTGGGCCACCATGCAATTGGGCCTCACGCCTTCTTGTCCTGTCCCCAACTACTACCACGTTGTCTTCTCCCTCTGACACCGTGGCGCCACCAAAGAAGCCTGCCCCGAGGAAGAGGGACACCGCGGATGGAGGGGAAGGCCGCAAGTGCCTGCATTGCGCCACGGATAAGACGCCGCAGTGGCGGACCGGGCCCATGGGCCCCAAAACACTCTGCAACGCGTGTGGTGTCAGGTACAAGTCGGGCCGGCTTGTGCCCGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTGCTGACGAAGCACTCTAATTCGCACCGTAAGGTGGTGGAGCTGAGGCGCCAGAAGGAGATGCTGAGGGCCCAGCAACAGCAGTTGCTGCAACTGCAACATCATCAGAACATGATGTTTGATGTCTCATCCAACGGTGACGATTACTTGATCCATCAACACGTGGGCCCCGATTTCACTCACCTGATCTAG 957 0.5528 MEAHEFFQTSFCPQFPSDNTTPTNVNTTSDHFIVEDFFDFSNDDAAITDTTFDSLPANSTDDSPPFDSTSNSNFLADISCRNSTDGNFSSDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGMKAPNDAASQAREPSPIFNPQVSVPAKARSKRSRGPPCNWASRLLVLSPTTTTLSSPSDTVAPPKKPAPRKRDTADGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVVELRRQKEMLRAQQQQLLQLQHHQNMMFDVSSNGDDYLIHQHVGPDFTHLI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01592 318 Coils Coil 267 290 - -
Rops10g01592 318 PIRSF Txn_fac_GATA_plant 1 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Rops10g01592 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 266 - -
Rops10g01592 318 MobiDBLite consensus disorder prediction 170 186 - -
Rops10g01592 318 ProSiteProfiles GATA-type zinc finger domain profile. 203 239 IPR000679 GO:0006355|GO:0043565
Rops10g01592 318 MobiDBLite consensus disorder prediction 132 209 - -
Rops10g01592 318 Gene3D - 203 253 IPR013088 GO:0006355|GO:0008270
Rops10g01592 318 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Rops10g01592 318 CDD ZnF_GATA 208 255 IPR000679 GO:0006355|GO:0043565
Rops10g01592 318 MobiDBLite consensus disorder prediction 191 209 - -
Rops10g01592 318 Pfam GATA zinc finger 209 242 IPR000679 GO:0006355|GO:0043565
Rops10g01592 318 PANTHER GATA TRANSCRIPTION FACTOR 19 283 - -
Rops10g01592 318 SMART GATA_3 203 253 IPR000679 GO:0006355|GO:0043565
Rops10g01592 318 FunFam GATA transcription factor 199 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01592 Rops-Chr10 29410664 29412138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01592 30 318 C2C2-Gata Transcription Factor Family AT4G32890 51.923 4.30e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops10g01592 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01592 - - mtr:11432019 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01592 10 29410664 29412138 Rops10g01592 10 29410664 29412138 ECH