Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01585 ATGAGTGTTGAACCCCAGAACTCAGAGACTGAGAGTAGCTCAAACTCATCTCCAGCAACGTCACCATCATCGTGGCCCCCACAATCCAAAAAGATAAGACGCATCGGAGACTCGAACAGGCATCCAGTGTACCGCGGGGTCCGCATGAGAAACTGGGGGAAATGGGTGTCTGAAATTCGCGAGCCAAGGAAGAAATCACGCATATGGCTAGGCACATTCCCTACACCAGAAATGGCTGCAAGAGCACACGACGTCGCTGCTCTCAGCATAAAGGGAAACGCCGCTATTCTCAACTTCCCTGAGCTTTCCAACTCGCTCCCACGACCCGCTTCACTCGCTCCTCGTGATGTTCAAGCTGCAGCAGCAAAAGCAGCTCACATGGACTTACCCTCTTCAGCAATGGACTTGTCTTCTGCTTCAGATGAATTGAGTGAGATAATTGAGCTTCCCAGGTTGGAAAGCAGTGATGAGTGTGGTGAGTTGGTTAAGGAGTTTGTGTTTATGGAATCCTTTGATGCATGGATGTATCAACCTCCTTGGTTGCAGACCATGGAAGACGTGCTTTGGAGCGCCACATACTTGGGTTGTAACTAA 594 0.5 MSVEPQNSETESSSNSSPATSPSSWPPQSKKIRRIGDSNRHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNAAILNFPELSNSLPRPASLAPRDVQAAAAKAAHMDLPSSAMDLSSASDELSEIIELPRLESSDECGELVKEFVFMESFDAWMYQPPWLQTMEDVLWSATYLGCN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01585 197 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Rops10g01585 197 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Rops10g01585 197 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Rops10g01585 197 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Rops10g01585 197 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Rops10g01585 197 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Rops10g01585 197 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Rops10g01585 197 MobiDBLite consensus disorder prediction 1 39 - -
Rops10g01585 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 158 - -
Rops10g01585 197 MobiDBLite consensus disorder prediction 1 28 - -
Rops10g01585 197 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Rops10g01585 197 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01585 Rops-Chr10 29259396 29260808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01585 7 186 AP2-EREBP Transcription Factor Family AT5G11590 57.561 4.82e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g01585 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01585 K09286 - gmx:100813069 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01585 10 29259396 29260808 Rops10g01585 10 29259396 29260808 ECH