Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01577 ATGTTCATCATGGTTCTTTCTCTAATCTTGGATGTTCAAGGCCAAGATAGGAAAGAACAGAACATGCCAGAATTGCCCCAAAGTATTCATCCAAGCAAAGGGGTTGTAATAATAGTCCTCTCCATAATGTTTGTCATAACATTTCTCTTACTTGCTTATGTGAAGTTTTGCAAGGTTAGAACTCATCAACTTCGGAACCAAAATCGCAGTATCCAAAACTTAATTGGATCAAGGTCTAGATTCTCTGGGGTTGACAGACAAGTGATTGAAACACTACCCTTCTTCGAGTTTTCTTCACTTAAGGGTTCTAAAGAAGGCCTAGAATGCACCGTTTGCCTTTCCAAATTCGAAGACACGGAGTTTCTGAGACTGCTTCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAGCAACTCTACTTGCCCTCTTTGCAGGTACAGGGTTGAAGCAGGGGACATCAAGAACCTCGCTTATTCATTGAGCTCAAGGTTCCTGCGAGTTCCTTCAAATTTAACGGATGACCCAAATCTTGAAATCTTTGTCCAGAGGGAACCATCTCATAGAGGGTCATCAAGAAGCAAGAGCAACAAAGAAGAACTACTTCTTGATCAAGGTGGTGATAACAGTAGTGGTGGTACAAAGTGGAAGCCTTTGCACATGATCAATCATAAAATAATCATCTCTGATGTTGTTACAAGGAGTAGATGGAGTGATCTTAATTCTTCAGACCTGTTATCTTTGAACTGTGAGATGCTTAATGATATGTGCAGCACTAGATTTTCTCCTTTGGAATCCACTAGCACTGAAAGGTTTCAAGGAACTTCAAGCCTTCCTTCTACTTCTTCCAATGAGGAAGAAAATTCATTTACGGCTCTTAATCCTGCTGAGAAAAGGTCCAAGTCTGAGATTGCCAAGGTTCCAAGGTTTGCAGAAATTGGCAAGCAAAATAGAATCAGAGAATGTGGTGCATCAAGTGGGGACAATGAGAGTGAAGAGAGGTTGTGGAGGATTTGGTTGCCAATTGCGAGAAGAACAGTTCAAAGGTTTGCAAGACAAGAAAGAAATTCAGTTGAAATAGAACACATACCTTTAGCTTCAAACGTTTGA 1125 0.4062 MFIMVLSLILDVQGQDRKEQNMPELPQSIHPSKGVVIIVLSIMFVITFLLLAYVKFCKVRTHQLRNQNRSIQNLIGSRSRFSGVDRQVIETLPFFEFSSLKGSKEGLECTVCLSKFEDTEFLRLLPKCKHAFHMNCIDKWLESNSTCPLCRYRVEAGDIKNLAYSLSSRFLRVPSNLTDDPNLEIFVQREPSHRGSSRSKSNKEELLLDQGGDNSSGGTKWKPLHMINHKIIISDVVTRSRWSDLNSSDLLSLNCEMLNDMCSTRFSPLESTSTERFQGTSSLPSTSSNEEENSFTALNPAEKRSKSEIAKVPRFAEIGKQNRIRECGASSGDNESEERLWRIWLPIARRTVQRFARQERNSVEIEHIPLASNV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01577 374 CDD RING-H2_EL5-like 108 151 - -
Rops10g01577 374 FunFam RING-H2 finger protein ATL43 84 158 - -
Rops10g01577 374 SUPERFAMILY RING/U-box 87 155 - -
Rops10g01577 374 SMART ring_2 109 150 IPR001841 -
Rops10g01577 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 360 - -
Rops10g01577 374 MobiDBLite consensus disorder prediction 269 307 - -
Rops10g01577 374 Pfam Ring finger domain 108 151 IPR001841 -
Rops10g01577 374 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Rops10g01577 374 MobiDBLite consensus disorder prediction 188 221 - -
Rops10g01577 374 MobiDBLite consensus disorder prediction 269 301 - -
Rops10g01577 374 MobiDBLite consensus disorder prediction 191 207 - -
Rops10g01577 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01577 Rops-Chr10 29222391 29223515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01577 12 362 C3H Transcription Factor Family AT2G20030 39.946 1.62e-75 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01577 K10664 - gmx:100816668 465.307