Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01572 ATGGAGAGGGTCGTCGGCGGGAAGTTTAAGCTTGGTCGGAAAATCGGTAGCGGTTCATTCGGTGAAATTTATATCGCCTCAAATATCGATACCTCTGAGATCGTCGCCGTCAAGATGGAAGACAAGAAGACCAAACATCCTCAACTATTGTACGAGGCCAAGTTATATAGTATTCTTCAAGGAGAAAGTGGGATTCCGAGTATGAAATGGTGCGGTATTGATGGAGACAATAATGTTCTAGTTATGGATCTCCTGGGACGGAGTCTTGAGGACCTTTTTGTCTATTGTGGGAGCAAGTTTTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTTTCAAGAATAGAGTACTTGCATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAAGCAAGTCAGGTTTATGTTATTGATTTTGGACTAACAAAAAGATATAGGGACCCTAGTACAAACAAGCATATTCCTTACAGAGAGAATAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCACTTAGGAATTGAGCAAAGTCGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGGGGAAGCCTTCCTTGGCAGGGCCTGAAAGCTGTCACTAGAAAGGAAAAATATGACAAGATTTGTGAGATGAAGTTATCAACCCCCGTTGAGATGCTCTGCAAGTCATATCCCACGGAGTTTGCTTCTTACTTTCATTATTGCCACTCTTTGACATTTGATCAACAACCAGATTATGGATTCTTGAAGCGTCTGTTTCGTGATTTGTTCACTCATGAAGGATATGATTCTGACTATTTATTTGACTGGACCATCCTAAAATATCGGCAAACGCAACAGATGAAGAGACAAAATCAATCATCTCCTTCAGCTGCTGTGCCTAGCAGTCTAGAACCAGTGGTAGTGGAAAAGCATAAAGGAATCAATGATTCAGCTCAAATTACAGCAACAAAAATGTTGGGCAATCATGATCACCCAAGTGTGCATGTGCAGCCTAAGCCATCTAATGTTCAGATTCGGAATGCCAAGAACCAGATGGAGAAGCATAGTGGGAAAAATGGTCCATCTACTTCATCTGCTATGCTGAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAGGCACATAGGAACCTCAAACGTTGGTCGTGTATTTGGGAGCAATTCCCGTGTTTCAAGCAGCTGGATTCCTTCATTACGCCGAATTTCTTCGGCCAAATAG 1281 0.4137 MERVVGGKFKLGRKIGSGSFGEIYIASNIDTSEIVAVKMEDKKTKHPQLLYEAKLYSILQGESGIPSMKWCGIDGDNNVLVMDLLGRSLEDLFVYCGSKFSLKTVLMLADQMLSRIEYLHSKGFLHRDIKPDNFLMGLGRKASQVYVIDFGLTKRYRDPSTNKHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTRKEKYDKICEMKLSTPVEMLCKSYPTEFASYFHYCHSLTFDQQPDYGFLKRLFRDLFTHEGYDSDYLFDWTILKYRQTQQMKRQNQSSPSAAVPSSLEPVVVEKHKGINDSAQITATKMLGNHDHPSVHVQPKPSNVQIRNAKNQMEKHSGKNGPSTSSAMLKSSTENVSKPERHIGTSNVGRVFGSNSRVSSSWIPSLRRISSAK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01572 426 FunFam Casein kinase I isoform delta-like 1 339 - -
Rops10g01572 426 Gene3D Transferase(Phosphotransferase) domain 1 1 338 - -
Rops10g01572 426 PANTHER CASEIN KINASE-RELATED 8 353 - -
Rops10g01572 426 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01572 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Rops10g01572 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops10g01572 426 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01572 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01572 426 MobiDBLite consensus disorder prediction 364 426 - -
Rops10g01572 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01572 Rops-Chr10 29173973 29180626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01572 8 213 MAP Kinase Kinase Kinase AT3G06030 27.064 1.48e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops10g01572 Pkinase 5.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01572 K08960 K08959 gmx:100810377 744.191