Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01560 ATGGAGCAGAGCGAAACGACGTTGGATTTAGCTCCGCGGAAATTGGCTAGGCAATTGGATTTCACTGCCGTCTGTGGAGGTCCGGAGAACTTGAAACTGCCGCCGCCGCCGCCGCAGTCACTGTCAAAATCAATTCCACGGCCGCCGTCGCAGCCGCCGTTCTCTCCGTCGCAATTACAGTTGGATTTGCAGTCACTAGGGCAACGGCCATGGTTATATTCACAGCCACAGGGGCAACAGCAGAGAACATCTCATTCTCAGGTAATGCCGCAATTGCAAGCACCGCGGCCACAGCTGGTTTCGTCGATTAATCGATTTCCGCAACCCATGCAGAAACTTCCGGTGAAGATGTTGCAAGTGGTGAAGCAAGAATCACCTAGATCAAAACCTCGAAATAATATGGAATCAAAGGACAGCACTCCGAAAAAACAAAAGCAATGTAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGTGAGTGCTTTGCATCTGGAATCTATTGTGATGGCTGCAACTGTGTAAATTGTCAAAATAATGTGGATCACGAGACAGCCAGACAGGAGGCAATTGGAATAACATTGGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCACAAGAACCACAAGATTCTAAGGAAGATGTGTCTGATATTCAAGTAATAGGAAAGCACAACAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCGTGGACTGCAAGAATTTTGAAGGAAGTGACGAAAGAAGAGCAATTTTTCATGAAGAGTATAATCTAGTTCGCATCAAACAGGCAGCTAATGTTACCATTGGTGGAGTAGTTGGGTCCTCCAGCTGTGGAACCCACATAACACCAAAGAAGAGAAAAACTAAGGAAATATTTTCTGGCAAATCAGCCGATCAAACTGCTAACATGACTGCTCTATTCCAACAGGAAATTAATGCTATAGCTTCATCACCTTCATCTCTGTCAGCTTCCTTTGTTTCTGACACTGCCAACCCAAGAATTTCAGGGTCTTCAAGATCTGCATACAGGTCTGTATTGGCGGATGTCCTCCAACCACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCTGGGGTAGCTGCAAAGACAAATGCAGAGATTAGTGGCAAAGTAGACCAGCAAATAGAGACTGGGAACTTTGAAGCTTCTTTTGCTTCATCATCTCAGTCGATACAAGACACTAGAGATGTCCACAAGCCTGTTTCTGATGATCATGTAAATAAAGGTGAAGCAGATGCAGTTGATATTGACAATTATAATAGGCCATTGTCACCAGAAACACTAGCATTGATGTGTGATGAACAGGATGAAATGTTTTCTGGTAGTGGTTCTGCAAATGGAGTGGCATGCAACAGCACTTATCAAAACATGATTCAAAGGTCATCTAATTCTGATGAACGCGCTAATCTTTATGGAGAACAGGAAAGGCTTGTGCTGACCAAGTTCCGGGATGTTCTTCGTGGACTCATTACTCTTGGTAGCATAAAAGAAACAACGTGCTCTTCATTAGCCAAGAAAGAGGTGGAAAGCAGGAAAGAACCTGCAGACAACGGCAATAGTGGTGCTGAAACTGACATGGGGAGTGAGAAGGGCATTCGCAGCAACTGCATTGCAAATTGCTCCATCCCAGCGGCTACAGAAATATCTCAGACAAAGTATGCAAGAACTAATGGACATAGTAATAATGATCTTTCATTGAGTTCTTCTGCAAAGTGGAATAAATGTATCGTGAAAGACTTCTGA 1842 0.4354 MEQSETTLDLAPRKLARQLDFTAVCGGPENLKLPPPPPQSLSKSIPRPPSQPPFSPSQLQLDLQSLGQRPWLYSQPQGQQQRTSHSQVMPQLQAPRPQLVSSINRFPQPMQKLPVKMLQVVKQESPRSKPRNNMESKDSTPKKQKQCNCKNSRCLKLYCECFASGIYCDGCNCVNCQNNVDHETARQEAIGITLERNPNAFRPKIASSPQEPQDSKEDVSDIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNFEGSDERRAIFHEEYNLVRIKQAANVTIGGVVGSSSCGTHITPKKRKTKEIFSGKSADQTANMTALFQQEINAIASSPSSLSASFVSDTANPRISGSSRSAYRSVLADVLQPQNVKNLCSLFVVLSGVAAKTNAEISGKVDQQIETGNFEASFASSSQSIQDTRDVHKPVSDDHVNKGEADAVDIDNYNRPLSPETLALMCDEQDEMFSGSGSANGVACNSTYQNMIQRSSNSDERANLYGEQERLVLTKFRDVLRGLITLGSIKETTCSSLAKKEVESRKEPADNGNSGAETDMGSEKGIRSNCIANCSIPAATEISQTKYARTNGHSNNDLSLSSSAKWNKCIVKDF* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01560 613 ProSiteProfiles CRC domain profile. 143 267 IPR005172 -
Rops10g01560 613 MobiDBLite consensus disorder prediction 419 440 - -
Rops10g01560 613 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 230 264 IPR005172 -
Rops10g01560 613 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 144 179 IPR005172 -
Rops10g01560 613 PANTHER TESMIN/TSO1-RELATED 41 521 IPR028307 -
Rops10g01560 613 SMART CXC_2 142 182 IPR033467 -
Rops10g01560 613 SMART CXC_2 227 268 IPR033467 -
Rops10g01560 613 MobiDBLite consensus disorder prediction 128 144 - -
Rops10g01560 613 MobiDBLite consensus disorder prediction 121 146 - -
Rops10g01560 613 MobiDBLite consensus disorder prediction 25 58 - -
Rops10g01560 613 MobiDBLite consensus disorder prediction 538 561 - -
Rops10g01560 613 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01560 Rops-Chr10 28986754 28993281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01560 13 542 CPP Transcription Factor Family AT4G29000 45.341 6.94e-137 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Rops10g01560 TCR 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01560 - K21776 gmx:100811459 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01560 10 28986754 28993281 Rops10g01560 10 28986754 28993281 ECH