Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01552 ATGGAAGGTGACAGGACAATGCCTGCTCCATCAAATGTAGCCGTGGATGGTGTTCAGAAAATTAGAGCACTGCATGGGAGGACTACTGGCCCTACAAGGCGCTCTACAAAAGGACAATGGACCCCGGAGGAGGATGAGATCTTGCGGAAGGCTGTTGAGCGTTTCAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGACAGAACTGATGTACAATGTCTGCATAGGTGGCAGAAGGTCTTAAATCCAGACCTTGTCAAAGGTCCATGGTCCAAAGAGGAAGATGAAATAATTATTGAAATGGTGAAGAAATATGGGCCTAAAAAGTGGTCTACTATCGCACAGAATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTAATCCGTGCTCATCAGATTTATGGGAACAGATGGGCAGAATTAACGAAGTTCTTACCGGGAAGGACAGACAACGCTATAAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCGGGCTTGCTTACCCAGTTACAAACTGTACCCCTTGTTGGAAATCCAAATCAACCCATTGCTTCAACCTCTTCAAGGCTGCAGCACAGTGGAGATGATAACGGTCCTAGGGGGACTGAAGGAGAGGAAGTTTCACAATGTAGCCAAGAGTCAGCTAATGCTGGTCACTTTCCATCTGCCAGAGAGATGAGCAATGCTGTTTTACAAACTGGGGAGGAATGCAGGCCAAACGAAGAATCTAATCTAGGAAAGGAATATAGTCCTAGTCAAGTATCCTGTTCAGAGCCATATTACGTGTCCCTGGATGATGTTACTGCATCCGTACCAGACATTGCTTGCCAAGAGGTTTACTCTTCTCAATTCATTGAGCAAAATTACGCACATGAACCTATAAATTCTACAAGCGGGGATTGCCAGCTTAATTTACATGCCTTAACCGATATTTCCTCACTGGACTTTGAGCAGGAATCATCACAGTTGCAAAATAATTGTATAGCTCCTAGTGAAAGTCACATGGTGAATGTTCCGTTTCAGTCTTCAGTTGGGTTAGGGATTTCAACGTCCATGAGATCTACATCTATGGACTCAATTAAAGTAGATCACATGTTGATATCTGATGATGAATGTTGCAGACTCCTATTTTCAGAGGCAATGAATGATGAATGCTTTTCGTCTGGAGATTATAATAAAGGTGTAAATATTGGTGACTTGTCTGGATGCACTTCATTTCTGTGTCAGTCATCTTTACCATCCGTCCCACCAGTACTTTCTTCTCCTGGTGGCAGGTTGTATTCTGCCGAAGCCAGTCAGTTGGTTGGGTCTGAGGATCAGCAGTTTGTCTCCAGAGCACATGATACCTTAATTTATGCCAATGACTCATCCAGTTCTCCTTGTATCGATAGGATTGATAGCGAAGAAATGCAAGAACCATCGGATGTTGTGAAGGACTCTTCAAAATTGGTCCCTGTAAATAGTTTTGGCCGTGGGTCAGATACTTTGCAAACTTGTGATCCAATGGATGAAAAGCCAAATGTGCATACAGAACAGGAGGACACAGGAGCTCTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTAAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCCCTAGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTTTAACTCCTTTCAGATTGTGGGACTCACCTTCTCGCGATAATAGTCCAGATGCTTTGTTGAAAAGTGCTGCTAAAACTTTCACTGGTACACCGTCTATATTAAAGAAACGACACCGAGATCTTTTATCTCCATTATCAGATAAAAGAATTGACAAGAAGCTTGAGATTGACATGACATCATCCTTGATTAAAAACTTCTCCCGTTTGGATGTCATGTTTGATGACAATGAGACTCAGGGAGCAGATTTGCTTTCTCCAGCTTCAATGCAAAAAAAGAACTCCGGTACCTCTGTTGAAGATGATAAAGAAAATTGTGGACAAGCTTTTAAAGGGGAACAAGTAGAGGAGAAAAATAAATCCACAATTTTGTACGAGCAAAAATCAGAAAAAGATACTGGTGAAAGTGATTCTCAGAATAAGACTGAGCAACAGCCTCTTGATGTTGATTCTAAGACGGAGAATGATGTAGCTACTGCTGCTGAGATTGTGCAACAACCTTCTGGAGTTTTGGTTGAACGTGATATGAATGACCAGTTCCTGTCTTCTCCAAATCAAGTTGGTTTAAAATCAGACAGGGTTCTAAGTTTAAGTGCTAAAAATCATAAAAATCCATGCTCAAGGGTTAATTCTCCTGCTGTTCGAGCAAAGGAGCACGAAAGACTTACAGTTGCCGTTACTTGTGTACAATCTGTCCGTTCATCAGGCCCAGGGGAGAATTCTGGTGATCATACCGGAAACGATGGAGGTTTTGAAACATGTAGCATATTTGGCGGAACACCTTTCAGGAAAAGTATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTAATCAACACATTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTTTTTCATGAGCCCGGGTGATAAAAGCTACGATGCAATTGGTTGGATGAAACAGATCAGCGAACAAACCGCTGCTCAATATGCCAATGCTCATGAGGTTTTGGAAAATGAAACTCCCAAGGCGTTAACAAAAGATGCAACTGGAAACGACCCGAACGGTGGTGACCAGGAAAATGACGATCCGCAAAATCAGCATGGGAACAGTTCTCAGTTGCCTTCAAATGCTTTGGTGGAGCGACGCATACTTGACTTTAGCGAATGTGGAACACCGGGCAAGGGTGATAACGGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTAATTCGTATTTGTTGAAAGGTTGTAGATAG 3021 0.4234 MEGDRTMPAPSNVAVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRKAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPDLVKGPWSKEEDEIIIEMVKKYGPKKWSTIAQNLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQTVPLVGNPNQPIASTSSRLQHSGDDNGPRGTEGEEVSQCSQESANAGHFPSAREMSNAVLQTGEECRPNEESNLGKEYSPSQVSCSEPYYVSLDDVTASVPDIACQEVYSSQFIEQNYAHEPINSTSGDCQLNLHALTDISSLDFEQESSQLQNNCIAPSESHMVNVPFQSSVGLGISTSMRSTSMDSIKVDHMLISDDECCRLLFSEAMNDECFSSGDYNKGVNIGDLSGCTSFLCQSSLPSVPPVLSSPGGRLYSAEASQLVGSEDQQFVSRAHDTLIYANDSSSSPCIDRIDSEEMQEPSDVVKDSSKLVPVNSFGRGSDTLQTCDPMDEKPNVHTEQEDTGALCYEPPRFPSLDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDNSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLEIDMTSSLIKNFSRLDVMFDDNETQGADLLSPASMQKKNSGTSVEDDKENCGQAFKGEQVEEKNKSTILYEQKSEKDTGESDSQNKTEQQPLDVDSKTENDVATAAEIVQQPSGVLVERDMNDQFLSSPNQVGLKSDRVLSLSAKNHKNPCSRVNSPAVRAKEHERLTVAVTCVQSVRSSGPGENSGDHTGNDGGFETCSIFGGTPFRKSIESPSAWKSPWLINTFLSSPRIDTEITIEDFGFFMSPGDKSYDAIGWMKQISEQTAAQYANAHEVLENETPKALTKDATGNDPNGGDQENDDPQNQHGNSSQLPSNALVERRILDFSECGTPGKGDNGKSSAMSFSSPNSYLLKGCR* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01552 1006 CDD SANT 91 135 IPR001005 -
Rops10g01552 1006 SMART sant 88 137 IPR001005 -
Rops10g01552 1006 SMART sant 36 85 IPR001005 -
Rops10g01552 1006 SMART sant 140 188 IPR001005 -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 933 966 - -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 986 1000 - -
Rops10g01552 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 210 227 - -
Rops10g01552 1006 FunFam Transcriptional activator Myb isoform A 36 88 - -
Rops10g01552 1006 FunFam Transcriptional activator Myb isoform A 89 141 - -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 925 1006 - -
Rops10g01552 1006 Coils Coil 908 928 - -
Rops10g01552 1006 Gene3D - 89 140 - -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 210 255 - -
Rops10g01552 1006 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 722 749 - -
Rops10g01552 1006 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Rops10g01552 1006 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Rops10g01552 1006 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Rops10g01552 1006 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Rops10g01552 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Rops10g01552 1006 CDD SANT 40 83 IPR001005 -
Rops10g01552 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Rops10g01552 1006 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Rops10g01552 1006 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Rops10g01552 1006 PANTHER MYB PROTEIN-RELATED 37 122 - -
Rops10g01552 1006 Gene3D - 142 201 - -
Rops10g01552 1006 MobiDBLite consensus disorder prediction 236 250 - -
Rops10g01552 1006 Gene3D - 36 88 - -
Rops10g01552 1006 CDD SANT 143 183 IPR001005 -
Rops10g01552 1006 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Rops10g01552 1006 FunFam Transcription factor MYB3R-2 142 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01552 Rops-Chr10 28920234 28927257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01552 5 1006 MYB Transcription Factor Family AT4G32730 44.729 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g01552 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01552 - K09420 gmx:100811335 1615.9