Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01546 ATGTTTGCACCATATTCGCCGGCGATTTCACCTGCAACCAAGCCACCATTGCCGGCATTTGACATTGCTCCTCCGCAATTTCCGCCGTCACCATCAGCATCTCCGGTTACCTCACCGGCGGCTTCAGTTCCGCCGACGTCGTCTTCAACTGTACCACTGGCCCCAACAAATTCTGCACCACCTCCGGTTGCATCACCGGCAATTCCAGCTCAGCCGGTGTTGCCCCCACCGTCACCGGAAAGTTTACTCGTTCCAGCTTCTTCGCCTGCAATCACATCTAATGAGAGTCCAGATTCGCCAACATCGTCTCCAGTTATATTACTTCCTCCGGCGGTGCCTCCGGTGTCTCTGGAAACGCCGGCGGCACCTGTAAGAAGAAAGTTTCCACCGTCTATAGTTGAAGCAGTGCCTCCAACCGCCACTTTTCCACCAACTTTGCATACTCCACTCATCACAGAACCTCCCTTGCCATCATGGGCAACAACACCGTCAAGCCCCATGTCACCTGCATCTTCACCGGAAGTGAAGTTTCGGCCAACACCATCAGGTGGAAGTTTGCCGGTGGCCGTGGAAGTTCACAAGCTTTCAGCCTTCAATATGTCAAGCGGACTCAAATATGGGCTTCTTGTGATTGGTGCTATCATTTTTGTGTTTGTTCTCGCCATCGTTTCAGTTCTGTGGAGGAATAAGAAGAAAAATAAGCAGAAGAATCGGTGCACTTATCACCATGATGAGGAAGAATCATCACCCGGTATTGGATCAAAAGGTTCTCATGTTATTCGAGTGCTATCAAATCCAACGCTACCCCCACATCTCACTGAGGGCTGTGGAGCTTCTGGCTCTGTGAACACAATTCCAAACCTTACTCCAAGCATTTCCTTTGGTCCTGTGAATGGTGTTTTGACATATGAAGAACTAATAGTAGCCACTAACCGTTTCTCTGAGTCCAACCTTCTTGGACAAGGTGGTTTTGGGTATGTATACAAAGGAGTTCTCCCAAGTGGGAAGGAAATTGCAGTTAAGAAGTTAAAAACAGGAAGCCAACAAGGGGAGAGAGAGTTTCAAGCTGAGGTTGAGATCATTAGCCGTGTGTATCATAAACATCTTGTTGAATTAATTGGATACTGTGTTACCAAGACAGAAAGATTGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTACATGGTGAGAGGCGGAATGTCATAGAATGGGCAAGGAGAATCAAAATTGCCTTGGCATCTGCAAAAGGGCTGGCATATTTACACGAAGATTGTAATCCAGCAATCATTCACCGTGATATCAAAGCATCTAATATTCTTCTTGATTTTAAGTTTGAAGCAAAGGTTTCTGATTTTGGCCTGGCAAAAATCTTCCCTATCACCGATAGTTGCATTACTCACCTCACCACCCAAGTGGTGGGAACCTTTGGATATCTGGCTCCAGAGTATGTATCAAGTGGTAAATTAACAGATAAATCAGATGTATATTCCTATGGAGTCATGCTTTTAGAACTAATAACCGGACGTCTACCAATCACTGCAGCAGGATCAAGGAATGAGAGCCTTGTTGACTGGGCTAGGCCCTTGCTTGCTCAAGCGCTACAAGATTGTAACTTCAACAATCTTGTTGATCCTAGGTTGCAGAAAAATTATGATGCTGATGAGATGGCTAGAATGATTACCTGTGCTGCTGCTTGTGTGCGCCATTCAGCAAGGCTTCGACCACGTATGAGCCAAATAGTTGGTGCCTTAGAAGGACTGGTTTCTCTAACCGACCTTGTTGGGGATATTACACCGGGGCACACCATGTTATACAATTGGTCAGATAGTTCAGATTATGATGCCAGCCAATATCAGCAGGACATTAGAAGTTTCAATTTGGCACTATCATGTCAGAATTACAGTTCCAGTGGGCATAGTGAAAGCACTAGTGCTTATGGTTTTCTTCACCCATAA 1968 0.4558 MFAPYSPAISPATKPPLPAFDIAPPQFPPSPSASPVTSPAASVPPTSSSTVPLAPTNSAPPPVASPAIPAQPVLPPPSPESLLVPASSPAITSNESPDSPTSSPVILLPPAVPPVSLETPAAPVRRKFPPSIVEAVPPTATFPPTLHTPLITEPPLPSWATTPSSPMSPASSPEVKFRPTPSGGSLPVAVEVHKLSAFNMSSGLKYGLLVIGAIIFVFVLAIVSVLWRNKKKNKQKNRCTYHHDEEESSPGIGSKGSHVIRVLSNPTLPPHLTEGCGASGSVNTIPNLTPSISFGPVNGVLTYEELIVATNRFSESNLLGQGGFGYVYKGVLPSGKEIAVKKLKTGSQQGEREFQAEVEIISRVYHKHLVELIGYCVTKTERLLVYEFVPNNTLEFHLHGERRNVIEWARRIKIALASAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEAKVSDFGLAKIFPITDSCITHLTTQVVGTFGYLAPEYVSSGKLTDKSDVYSYGVMLLELITGRLPITAAGSRNESLVDWARPLLAQALQDCNFNNLVDPRLQKNYDADEMARMITCAAACVRHSARLRPRMSQIVGALEGLVSLTDLVGDITPGHTMLYNWSDSSDYDASQYQQDIRSFNLALSCQNYSSSGHSESTSAYGFLHP* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01546 655 MobiDBLite consensus disorder prediction 154 181 - -
Rops10g01546 655 Pfam Protein kinase domain 314 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01546 655 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 216 630 IPR047117 -
Rops10g01546 655 MobiDBLite consensus disorder prediction 9 35 - -
Rops10g01546 655 MobiDBLite consensus disorder prediction 85 102 - -
Rops10g01546 655 MobiDBLite consensus disorder prediction 55 83 - -
Rops10g01546 655 MobiDBLite consensus disorder prediction 36 54 - -
Rops10g01546 655 CDD STKc_IRAK 319 591 - -
Rops10g01546 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Rops10g01546 655 ProSitePatterns Protein kinases ATP-binding region signature. 319 342 IPR017441 GO:0005524
Rops10g01546 655 MobiDBLite consensus disorder prediction 235 255 - -
Rops10g01546 655 FunFam proline-rich receptor-like protein kinase PERK8 389 603 - -
Rops10g01546 655 MobiDBLite consensus disorder prediction 1 107 - -
Rops10g01546 655 Gene3D Transferase(Phosphotransferase) domain 1 389 597 - -
Rops10g01546 655 SMART serkin_6 313 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01546 655 Gene3D Phosphorylase Kinase; domain 1 287 388 - -
Rops10g01546 655 FunFam Proline-rich receptor-like protein kinase PERK8 286 388 - -
Rops10g01546 655 ProSiteProfiles Protein kinase domain profile. 313 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01546 655 SUPERFAMILY Protein kinase-like (PK-like) 288 588 IPR011009 -
Rops10g01546 655 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01546 Rops-Chr10 28828022 28833261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01546 232 651 Trihelix Transcription Factor Family AT4G32710 54.907 2.03e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Rops10g01546 Pkinase 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01546 - - gmx:100810262 753.436