Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01542 ATGGGAAAAGGAACAGGAAGCTTTGGGAAGAGGAGGAATAAGACTCACACACTCTGTGTGCGATGCGGACGCAGAAGCTTCCACATTCAGAAGAGTCGCTGTGCTGCTTGTGCTTATCCAGCTAGCCGCGTCCGAAAATACAATTGGAGTGTGAAGGCTATCAGAAGAAAAACCACAGGAACTGGCCGTATGAGGTACCTCCGTCATGTACCCCGTAGGTTCAAGACTAACTTCAGAGAGGGTACTCAAGCAACCCCCAGGAACAAGTCCGTGGCTGCAGCCTCCTAA 288 0.5104 MGKGTGSFGKRRNKTHTLCVRCGRRSFHIQKSRCAACAYPASRVRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKTNFREGTQATPRNKSVAAAS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01542 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 95 - -
Rops10g01542 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Rops10g01542 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Rops10g01542 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Rops10g01542 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Rops10g01542 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Rops10g01542 95 FunFam Ribosomal protein L37 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01542 Rops-Chr10 28781829 28782967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01542 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G15250 88.421 1.49e-58 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01542 K02922 - qsu:111987772 191.815