Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01532 ATGGTAGCTGTTGAAACAAATCATATGGATAGGAAACGAACCCGGAAACGACCTCGTCTCACGTGGGACGTGGCCCCTTCATCAGTGCCAGAGGCGCAAAGGGCTCTGGTGGCGAGCGACGAAGGAATCGAAAGAAAACATGCTTCGCCTCCACGAAGGGACGATGATCGCGATGGACATTATGTCTTTAATCTCGGAGAAAATCTCACTCCTAGATATAAAATACTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGTCAAACTAGAGAATATGTGGCTATCAAGGTAATAAGAAGCATACGGAAATATCGCGATGCAGCGATGCTCGAGGTTGATGTGCTTCAACGTTTAGCGAAGAATGATCGAGGAAGCTCACGCTGTGTGCAGATCCGGAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGGCCTAGCTTATTTGATTTTCTAAAGAGAACTAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTTCGCCTAATCCACACTGACCTGAAGCCAGAAAATATACTACTTGTTTCTTCTGAATATGTAAAGCTCCCTAGCTGTAAGAGGGTTTCCTCAGATGATATGCAATTCAGATGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCCGAGATTATTCTAGGTTTAGGGTGGTCATTCCCATGTGATCTGTGGAGTGTTGGTTGTATTCTCATTGAACTATGCTCGGGTGAAGCACTGTTTCAAACTCACGAAAACTTGGAGCACCTGGCAATGATGGAGAGAGTTCTGGGACCTCTACCTGAGCACATGGTTCAGAGATCTAGCAGGGGTGCAGAAAAGTATTTCAAGCGTGGATTGCGACTAAAATGGCCCGAAGGAGCTGTTTCAAGGGAGAGCATTCATGCTGTGAAGAAGCTTGATCATCTTAAGGATATTGTATCACGTCATATAGAGTCCTCAAGGGCCTCTTTAACTGACTTGTTACGTGGTTTGTTAACATATGATCCGAGCGAACGTCTAACAGCTCGCCAAGCCCTTGATCATCCCTTCTTTAGGGATCCAACTTAA 1209 0.4458 MVAVETNHMDRKRTRKRPRLTWDVAPSSVPEAQRALVASDEGIERKHASPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVIRSIRKYRDAAMLEVDVLQRLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRTKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSCKRVSSDDMQFRCLPKSSAIKLIDFGSTAFDNQNHSSIVSTRHYRAPEIILGLGWSFPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPEHMVQRSSRGAEKYFKRGLRLKWPEGAVSRESIHAVKKLDHLKDIVSRHIESSRASLTDLLRGLLTYDPSERLTARQALDHPFFRDPT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01532 402 MobiDBLite consensus disorder prediction 1 20 - -
Rops10g01532 402 ProSiteProfiles Protein kinase domain profile. 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01532 402 CDD PKc_CLK 60 398 - -
Rops10g01532 402 FunFam Serine/threonine-protein kinase AFC2 149 398 - -
Rops10g01532 402 Gene3D Phosphorylase Kinase; domain 1 60 153 - -
Rops10g01532 402 MobiDBLite consensus disorder prediction 38 59 - -
Rops10g01532 402 Pfam Protein kinase domain 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01532 402 MobiDBLite consensus disorder prediction 36 59 - -
Rops10g01532 402 SMART serkin_6 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01532 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 32 400 - -
Rops10g01532 402 MobiDBLite consensus disorder prediction 1 24 - -
Rops10g01532 402 SUPERFAMILY Protein kinase-like (PK-like) 60 400 IPR011009 -
Rops10g01532 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Rops10g01532 402 FunFam Serine/threonine-protein kinase AFC2 60 153 - -
Rops10g01532 402 Gene3D Transferase(Phosphotransferase) domain 1 127 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01532 Rops-Chr10 28618420 28622364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01532 72 400 Core Cell Cycle Gene Families AT3G48750 27.381 8.79e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Rops10g01532 Pkinase 9.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01532 K08287 - gmx:100782453 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01532 10 28618420 28622364 Rops10g01532 10 28618420 28622364 ECH