Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01528 ATGCAAAAGGAAAAGGAAGCAATTATCAAGGAAGGGAAGGATATAGAAATGGAAGGAACTCGTGGAAAAGAGGAAACCCTACCACCCGGGTTTCGATTTCATCCAACTGATGAAGAACTCATCACTTGCTATCTCATAAATAAGTTATCGGATACTAGTTTTACAGGCAGAGCAATAACTGATGTAGATCTCAACAAATGTGAACCATGGGAGCTGCCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAATCTTAGAGATCGTAAATACCCCACTGGTGTGAGAACTAATCGAGCAACCAATACTGGATATTGGAAGACCACTGGAAAAGATAAGGAGATCTTCAATAGTGTTACATCGGAGTTGGTTGGAATGAAGAAGACTTTGGTTTTCTACAAAGGTAGAGCTCCAAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATACCGAATTCACTCAAAATCCAGCTTCAGAACTAACAAGCAGGATGAATGGGTGGTTTGCCGGATATTTCAGAAGAGTGCTGGTGCCAAAAAGTACCCTTCTTCCAACCACACAAGAGCAGTGAATCCTTATAGCCTAGACATAGCTCCTAACATTGTACCACAACCAATGATGCATCTGGGAGATCCTGCTTCCCATTTCCTTTATGGACGGAATTACATGAACAATGCAGAGCTAGCTGAAATTGCTAGGGTTTTGAGAGGAGGTGGATCAACCAGTAGTGTCAACCTACCAATGCAATCCCAATTGAACTACCCTGTAACAGCAGCAGCAGCAGCAGCAGGAGGATTCACCATTTCAGGGCTTAATCTGAATCTTGGAGGAGCAGCCACAATGCAACCTTCACCACCTCCTTCTCAGACAATGGCTCAATTACATGATGTCAGTTCCAACATGATGACAGCAAGTTCTCTTGGGGCAGAGAATGTAGGTTTTAGTGCAGAAATGAGCAACACAAATCTTCATGGTAATAATAGGTATTTGGGCATGGACCATTGCATGGATCTAGACAATTACTGGCCTTCCTACTAA 1044 0.4291 MQKEKEAIIKEGKDIEMEGTRGKEETLPPGFRFHPTDEELITCYLINKLSDTSFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTNKQDEWVVCRIFQKSAGAKKYPSSNHTRAVNPYSLDIAPNIVPQPMMHLGDPASHFLYGRNYMNNAELAEIARVLRGGGSTSSVNLPMQSQLNYPVTAAAAAAGGFTISGLNLNLGGAATMQPSPPPSQTMAQLHDVSSNMMTASSLGAENVGFSAEMSNTNLHGNNRYLGMDHCMDLDNYWPSY* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01528 347 FunFam NAC domain-containing protein 100-like 36 180 - -
Rops10g01528 347 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Rops10g01528 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 276 - -
Rops10g01528 347 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Rops10g01528 347 Gene3D NAC domain 36 180 IPR036093 GO:0003677|GO:0006355
Rops10g01528 347 SUPERFAMILY NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01528 Rops-Chr10 28594022 28597202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01528 21 347 NAC Transcription Factor Family AT2G24430 54.728 1.26e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g01528 NAM 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01528 - - gmx:100804931 600.512