Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01524 ATGGCGGCGTCTCAATCTCTGGCACAGTCGTCGGTTACCTCCGGTTGCGGTTACTTCGAACGGATGCCAACGACGGAATCGGATCTCGACGAGTTCCTGAATCTCGATTACGATCTTCGGTATCAGAGTTTCGCCGAAACGGATGCATTATGGGGCAACGTTTTACAAAATCTGGTACCGCTTGCTGCTATTGGGCTGACTGGAAATATTTCGTCAACGGATGTGACGACTTCATTTTCAACTTGTGATGGACTGACAGACACCCCTTGTTCCCAAAACCTTACTTCCAAGGATTCCACTATCACAGCCACTATTGATTCTCAGTCATCGATGTGTGGCACTGTTGGCAGCCCTGTGTCGGCTAATAAGCCAAACGACAGAGAGAATCATACCAAAGGAGCTACAAGTGGTTCCTCTGAGCCGTCTGATGAGGATGATGAATCAGGTCCTTGTGAACAGAGCACAAATCCAGTTGATATGAAGCGCCTCAGAAGGAAGGTTTCTAATCGTGAGTCAGCCAGGAGATCAAGAAGAAGAAAACAAGCGCATTTGGCTGAACTTGAGCAGCAGGTTGATAAACTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTACAGGTGCTAGACAACAATATCGTGAGGCTGATACGAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTAAGAGCTAAGGTGAAGTTAGCCGAGGATATGGTCACTCGGGGCTCTTTCACCACGCTAAACAATCAGCTTCTTCAGAATCACTGTCAATTGAGCACACCACCACCACAAATCAACACAACTAGTCTGCCCCGCATGACACATGTCTCGCCTACCATTACTGTCCATGGAAATGATGCCTCATACGGTGGTGGCACAGTTGGTGAACAGAATTTAGCTCTTGGGATTGGAAACTTGGATATAACTTACAATGAAGTCAATAATGGAGTCACAAGCAATGCTATGAACTGTGAGACTATCTGGCCTTAA 993 0.4612 MAASQSLAQSSVTSGCGYFERMPTTESDLDEFLNLDYDLRYQSFAETDALWGNVLQNLVPLAAIGLTGNISSTDVTTSFSTCDGLTDTPCSQNLTSKDSTITATIDSQSSMCGTVGSPVSANKPNDRENHTKGATSGSSEPSDEDDESGPCEQSTNPVDMKRLRRKVSNRESARRSRRRKQAHLAELEQQVDKLKLENATLYKQFTGARQQYREADTNNRVLKSDVEALRAKVKLAEDMVTRGSFTTLNNQLLQNHCQLSTPPPQINTTSLPRMTHVSPTITVHGNDASYGGGTVGEQNLALGIGNLDITYNEVNNGVTSNAMNCETIWP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01524 330 MobiDBLite consensus disorder prediction 109 182 - -
Rops10g01524 330 Gene3D - 160 217 - -
Rops10g01524 330 FunFam BZIP transcription factor 159 210 - -
Rops10g01524 330 CDD bZIP_plant_GBF1 162 213 IPR045314 GO:0003700|GO:0006355
Rops10g01524 330 Coils Coil 170 204 - -
Rops10g01524 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 164 179 IPR004827 GO:0003700|GO:0006355
Rops10g01524 330 SMART brlzneu 157 221 IPR004827 GO:0003700|GO:0006355
Rops10g01524 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 222 IPR004827 GO:0003700|GO:0006355
Rops10g01524 330 MobiDBLite consensus disorder prediction 109 124 - -
Rops10g01524 330 SUPERFAMILY Leucine zipper domain 160 212 IPR046347 GO:0003700|GO:0006355
Rops10g01524 330 PANTHER BASIC LEUCINE ZIPPER 63 85 294 - -
Rops10g01524 330 Coils Coil 212 239 - -
Rops10g01524 330 Pfam bZIP transcription factor 160 212 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01524 Rops-Chr10 28558845 28563931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01524 106 330 bZIP Transcription Factor Family AT5G24800 49.351 5.16e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops10g01524 bZIP_1 2.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01524 K25784 - gmx:780555 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01524 10 28558845 28563931 Rops10g01524 10 28558845 28563931 ECH